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来自腐烂山毛榉枯木的微生物元蛋白质组数据。

Microbial metaproteome data from decayed beech dead wood.

作者信息

Kipping Lydia, Holzscheck Nicholas, Maurer Florian, Muszynski Sarah, Noll Matthias, Jehmlich Nico

机构信息

Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research GmbH - UFZ, Permoserstraße 15, 04318, Leipzig, Germany.

Coburg University of Applied Sciences and Arts, Institute for Bioanalysis, Friedrich-Streib-Straße 2, 96450, Coburg, Germany.

出版信息

Data Brief. 2020 Feb 14;29:105285. doi: 10.1016/j.dib.2020.105285. eCollection 2020 Apr.

DOI:10.1016/j.dib.2020.105285
PMID:32123712
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7038588/
Abstract

Wood-decomposition in terrestrial ecosystems is a very important process with huge ecologic consequences. This decomposition process is a combination of biological respiration, leaching and fragmentation, mainly triggered by organismic activities. In order to gain a deeper insight into these microbial communities and their role in deadwood decay, we used metaproteomics. Metaproteomics is an important tool and offers the ability to characterize the protein complement of environmental microbiota at a given point in time. In this dataset, we provide data of an exemplary beech wood log and applied different extraction methods to provide the proteome profile of beech dead wood and their corresponding fungal-bacterial community.

摘要

陆地生态系统中的木材分解是一个非常重要的过程,具有巨大的生态影响。这个分解过程是生物呼吸、淋溶和破碎的组合,主要由生物活动引发。为了更深入地了解这些微生物群落及其在枯木腐烂中的作用,我们使用了宏蛋白质组学。宏蛋白质组学是一种重要工具,能够在给定时间点对环境微生物群的蛋白质组进行表征。在这个数据集中,我们提供了一个典型山毛榉木原木的数据,并应用了不同的提取方法来提供山毛榉枯木及其相应真菌-细菌群落的蛋白质组概况。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab7f/7038588/078f19b53103/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab7f/7038588/2e4e90fb7409/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab7f/7038588/90e9c3153bb2/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab7f/7038588/3fd5cb103742/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab7f/7038588/078f19b53103/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab7f/7038588/2e4e90fb7409/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab7f/7038588/90e9c3153bb2/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab7f/7038588/3fd5cb103742/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab7f/7038588/078f19b53103/fx1.jpg

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本文引用的文献

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Copper in Wood Preservatives Delayed Wood Decomposition and Shifted Soil Fungal but Not Bacterial Community Composition.木材防腐剂中的铜延缓了木材的分解,并改变了土壤真菌但未改变土壤细菌群落组成。
Appl Environ Microbiol. 2019 Feb 6;85(4). doi: 10.1128/AEM.02391-18. Print 2019 Feb 15.
2
Differential sensitivity of total and active soil microbial communities to drought and forest management.土壤微生物群落总量和活性对干旱及森林经营的差异敏感性。
Glob Chang Biol. 2017 Oct;23(10):4185-4203. doi: 10.1111/gcb.13790. Epub 2017 Jul 6.
3
Network analysis reveals ecological links between N-fixing bacteria and wood-decaying fungi.
木质素降解酶系及其在木质素降解真菌中的作用
ISME J. 2024 Jan 8;18(1). doi: 10.1093/ismejo/wrae050.
4
Targeted Metagenomics of Retting in Flax: The Beginning of the Quest to Harness the Secret Powers of the Microbiota.亚麻沤麻的靶向宏基因组学:探索微生物群神秘力量征程的开端
Front Genet. 2020 Oct 27;11:581664. doi: 10.3389/fgene.2020.581664. eCollection 2020.
网络分析揭示了固氮细菌与木材腐朽真菌之间的生态联系。
PLoS One. 2014 Feb 5;9(2):e88141. doi: 10.1371/journal.pone.0088141. eCollection 2014.