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利用 WorMotel 系统优化线虫基于运动的寿命评估的标准。

Optimized criteria for locomotion-based healthspan evaluation in C. elegans using the WorMotel system.

机构信息

Animal Physiology and Neurobiology, Department of Biology, KU Leuven, Leuven, Belgium.

Department of Bioengineering, University of Pennsylvania, Philadelphia, United States of America.

出版信息

PLoS One. 2020 Mar 3;15(3):e0229583. doi: 10.1371/journal.pone.0229583. eCollection 2020.

Abstract

Getting a grip on how we may age healthily is a central interest of biogerontological research. To this end, a number of academic teams developed platforms for life- and healthspan assessment in Caenorhabditis elegans. These are very appealing for medium- to high throughput screens, but a broader implementation is lacking due to many systems relying on custom scripts for data analysis that others struggle to adopt. Hence, user-friendly recommendations would help to translate raw data into interpretable results. The aim of this communication is to streamline the analysis of data obtained by the WorMotel, an economically and practically appealing screening platform, in order to facilitate the use of this system by interested researchers. We here detail recommendations for the stepwise conversion of raw image data into activity values and explain criteria for assessment of health in C. elegans based on locomotion. Our analysis protocol can easily be adopted by researchers, and all needed scripts and a tutorial are available in S1 and S2 Files.

摘要

了解我们如何健康衰老,这是生物老年学研究的一个核心关注点。为此,一些学术团队开发了用于秀丽隐杆线虫的寿命和健康跨度评估的平台。这些平台非常适合中等至高通量筛选,但由于许多系统依赖于用于数据分析的自定义脚本,其他系统难以采用,因此缺乏更广泛的应用。因此,用户友好的建议将有助于将原始数据转化为可解释的结果。本通讯的目的是简化通过 WorMotel 获得的数据的分析,WorMotel 是一个经济实用的筛选平台,以方便有兴趣的研究人员使用该系统。我们在这里详细介绍了将原始图像数据逐步转换为活动值的建议,并解释了基于运动的秀丽隐杆线虫健康评估的标准。我们的分析方案可以很容易地被研究人员采用,所有需要的脚本和教程都可以在 S1 和 S2 文件中找到。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d32e/7053758/479e5aed25c8/pone.0229583.g001.jpg

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