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应用傅里叶变换红外光谱法区分凝固酶阴性葡萄球菌和其他病原菌。

Discrimination of Strains from Coagulase-Negative Staphylococci and Other Pathogens by Fourier Transform Infrared Spectroscopy.

机构信息

Emanuel Institute of Biochemical Physics, Moscow 119991, Russia.

Bakulev National Medical Research Center of Cardiovascular Surgery, Moscow 121552, Russia.

出版信息

Anal Chem. 2020 Apr 7;92(7):4943-4948. doi: 10.1021/acs.analchem.9b05050. Epub 2020 Mar 10.

Abstract

is an extremely infectious and malignant pathogen among many bacteria species. The aim of this work is to provide a robust classification model that would be able to identify independent of the culture growth stage and the variations in bacteria concentration in suspension and also one that would be able to identify the pathogen among both taxonomically close species of the same genus and taxonomically distant species of different genera, using Fourier transform infrared spectroscopy (FTIR). In total, the spectra of 141 isolates of 17 bacteria have been used. Based on a combination of principal component analysis (PCA) and linear discriminant analysis (LDA), an identification model providing 100% sensitivity and 98% specificity was built. Inherent reliability and flexibility of the model have been shown. The proposed method of analysis allows us to get closer to the diagnostic requirements in the field of clinical microbiology, and it can be utilized for typing of other pathogenic bacteria species.

摘要

是许多细菌物种中极具传染性和恶性的病原体。本工作的目的是提供一个强大的分类模型,该模型能够在独立于培养生长阶段和悬浮液中细菌浓度变化的情况下进行识别,并且能够在同一属的分类上密切相关的物种和不同属的分类上遥远的物种之间识别病原体,使用傅里叶变换红外光谱(FTIR)。总共使用了 17 种细菌的 141 个分离株的光谱。基于主成分分析(PCA)和线性判别分析(LDA)的组合,建立了一个提供 100%灵敏度和 98%特异性的识别模型。显示了模型的固有可靠性和灵活性。该分析方法使我们更接近临床微生物学领域的诊断要求,并且可以用于其他病原菌的分型。

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