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本文引用的文献

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Fengycin produced by Bacillus subtilis 9407 plays a major role in the biocontrol of apple ring rot disease.枯草芽孢杆菌9407产生的丰原素在苹果轮纹病的生物防治中起主要作用。
Microbiol Res. 2017 Jun;199:89-97. doi: 10.1016/j.micres.2017.03.004. Epub 2017 Mar 21.
2
Whole-genome sequencing of Bacillus velezensis LS69, a strain with a broad inhibitory spectrum against pathogenic bacteria.贝莱斯芽孢杆菌LS69的全基因组测序,该菌株对病原菌具有广泛的抑制谱。
J Biotechnol. 2017 May 10;249:20-24. doi: 10.1016/j.jbiotec.2017.03.018. Epub 2017 Mar 18.
3
The complete genome sequence of Bacillus velezensis 9912D reveals its biocontrol mechanism as a novel commercial biological fungicide agent.贝莱斯芽孢杆菌9912D的全基因组序列揭示了其作为一种新型商业生物杀菌剂的生防机制。
J Biotechnol. 2017 Apr 10;247:25-28. doi: 10.1016/j.jbiotec.2017.02.022. Epub 2017 Feb 21.
4
Complete genome sequence of Bacillus velezensis M75, a biocontrol agent against fungal plant pathogens, isolated from cotton waste.从棉花废料中分离得到的对植物真菌病原体具有生物防治作用的贝莱斯芽孢杆菌M75的全基因组序列
J Biotechnol. 2017 Jan 10;241:112-115. doi: 10.1016/j.jbiotec.2016.11.023. Epub 2016 Nov 27.
5
Complete genome sequence of Bacillus subtilis BSD-2, a microbial germicide isolated from cultivated cotton.枯草芽孢杆菌BSD-2的全基因组序列,一种从栽培棉花中分离出的微生物杀菌剂。
J Biotechnol. 2016 Jul 20;230:26-7. doi: 10.1016/j.jbiotec.2016.05.019. Epub 2016 May 13.
6
Novel Routes for Improving Biocontrol Activity of Bacillus Based Bioinoculants.提高基于芽孢杆菌的生物菌剂生物防治活性的新途径
Front Microbiol. 2015 Dec 10;6:1395. doi: 10.3389/fmicb.2015.01395. eCollection 2015.
7
Biocontrol mechanism by root-associated Bacillus amyloliquefaciens FZB42 - a review.根系相关解淀粉芽孢杆菌FZB42的生物防治机制——综述
Front Microbiol. 2015 Jul 28;6:780. doi: 10.3389/fmicb.2015.00780. eCollection 2015.
8
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.SOAPdenovo2:一种经验丰富的、内存效率高的短读长从头组装器。
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
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A mimicking-of-DNA-methylation-patterns pipeline for overcoming the restriction barrier of bacteria.一种模拟 DNA 甲基化模式的方法,用于克服细菌的限制障碍。
PLoS Genet. 2012 Sep;8(9):e1002987. doi: 10.1371/journal.pgen.1002987. Epub 2012 Sep 27.
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Shifting the genomic gold standard for the prokaryotic species definition.动摇原核生物种定义的基因组黄金标准。
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从中国健康苹果中分离出的菌株的基因组序列数据草案。

Draft genome sequence data of strain , isolated from healthy apples in China.

作者信息

Zeng Qingchao, Xie Jianbo, Li Yan, Gu Xiaofei, Wang Qi

机构信息

College of Plant Protection, Key Laboratory of Plant Pathology, Ministry of Agriculture, China Agricultural University, Beijing, China.

College of Biological Sciences and Technology, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Beijing Forestry University, Beijing, China.

出版信息

Data Brief. 2020 Feb 8;29:105143. doi: 10.1016/j.dib.2020.105143. eCollection 2020 Apr.

DOI:10.1016/j.dib.2020.105143
PMID:32140503
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7052065/
Abstract

strain 9407 is an endophyte which was isolated from healthy apples from an infested orchard that exhibits strong inhibitory activity against . Whole-genome sequencing of 9407 was performed using the Illumina Hiseq platforms. Here, we report the draft genome sequence of strain 9407 containing 16 scaffolds (4,062,615 bp), 4033 coding sequences, and an average 43.66% G + C content. The genome contains genes responsible for the production of several bioactive secondary metabolites, including the lipopeptides fengycin and surfactin. The genome information will provide fundamental knowledge of the organism. This whole-genome shotgun data has been deposited at DDBJ/EMBL/GenBank under the accession numbers PISO00000000.

摘要

菌株9407是一种从受侵染果园的健康苹果中分离出的内生菌,它对……表现出很强的抑制活性。使用Illumina Hiseq平台对菌株9407进行了全基因组测序。在此,我们报告了菌株9407的基因组草图序列,其包含16个支架(4,062,615 bp)、4033个编码序列,平均G + C含量为43.66%。该基因组包含负责多种生物活性次生代谢产物合成的基因,包括脂肽丰原素和表面活性素。这些基因组信息将为该生物体提供基础知识。这个全基因组鸟枪法数据已保存在DDBJ/EMBL/GenBank中,登录号为PISO00000000。