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[黄酮及其衍生物作为铜绿假单胞菌群体感应调节因子LasR潜在抑制剂的计算机模拟筛选]

[In silico Screening of Flavones and its Derivatives as Potential Inhibitors of Quorum-Sensing Regulator LasR of Pseudomonas aeruginosa].

作者信息

Abelyan N, Grabski H, Tiratsuyan S

机构信息

Institute of Biomedicine and Pharmacy, Russian-Armenian University, Yerevan, 0051 Armenia.

Faculty of Biology, Yerevan State University, Yerevan, 0025 Armenia.

出版信息

Mol Biol (Mosk). 2020 Jan-Feb;54(1):153-163. doi: 10.31857/S0026898420010024.

Abstract

Antibiotic resistance is a global problem nowadays and in 2017 the World Health Organization published the list of bacteria for which treatment are urgently needed, where Pseudomonas aeruginosa is of critical priority. Current therapies lack efficacy because this organism creates biofilms conferring increased resistance to antibiotics and host immune responses. The strategy is to "not kill, but disarm" the pathogen and resistance will be developed slowly. It has been shown that LasI/LasR system is the main component of the quorum sensing system in P. aeruginosa. LasR is activated by the interaction with its native autoinducer. A lot flavones and their derivatives are used as antibacterial drug compounds. The purpose is to search compounds that will inhibit LasR. This leads to the inhibition of the synthesis of virulence factors thus the bacteria will be vulnerable and not virulent. We performed virtual screening using AutoDock Vina, rDock, LeDock for obtaining consensus predictions. The results of virtual screening suggest benzamides which are synthetical derivatives of flavones as potential inhibitors of transcriptional regulator LasR. These are consistent with recently published experimental data, which demonstrate the high antibacterial activity of benzamides. The compounds interact with the ligand binding domain of LasR with higher binding affinity than with DNA binding domain. Among the selected compounds, by conformational analysis, it was found that there are compounds that bind to the same amino acids of ligand binding domain as the native autoinducer. This could indicate the possibility of competitive interaction of these compounds. A number of compounds that bind to other conservative amino acids ligand binding domain have also been discovered, which will be of interest for further study. Selected compounds meet the criteria necessary for their consideration as drugs and can serve as a basis for conducting further in vitro/in vivo experiments. It could be used for the development of modern anti-infective therapy based on the quorum sensing system of P. aeruginosa.

摘要

抗生素耐药性是当今全球性问题,2017年世界卫生组织公布了急需治疗的细菌名单,其中铜绿假单胞菌被列为极其优先的类别。当前疗法缺乏疗效,因为这种微生物会形成生物膜,从而增强对抗生素和宿主免疫反应的抗性。策略是“不杀死病原体,而是解除其武装”,这样耐药性就会缓慢产生。研究表明,LasI/LasR系统是铜绿假单胞菌群体感应系统的主要组成部分。LasR通过与其天然自诱导物相互作用而被激活。许多黄酮类及其衍生物被用作抗菌药物化合物。目的是寻找能够抑制LasR的化合物。这将导致毒力因子合成受到抑制,从而使细菌变得脆弱且无毒力。我们使用AutoDock Vina、rDock、LeDock进行虚拟筛选以获得一致性预测。虚拟筛选结果表明,作为黄酮类合成衍生物的苯甲酰胺是转录调节因子LasR的潜在抑制剂。这些结果与最近发表的实验数据一致,该实验数据证明了苯甲酰胺具有高抗菌活性。这些化合物与LasR的配体结合结构域相互作用,其结合亲和力高于与DNA结合结构域的结合亲和力。在所选化合物中,通过构象分析发现,有些化合物与天然自诱导物一样,与配体结合结构域的相同氨基酸结合。这可能表明这些化合物存在竞争性相互作用的可能性。还发现了一些与配体结合结构域的其他保守氨基酸结合的化合物,这将是进一步研究的关注点。所选化合物符合将其视为药物所需的标准,可作为进一步进行体外/体内实验的基础。它可用于基于铜绿假单胞菌群体感应系统开发现代抗感染疗法。

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