Wu David, Luo Xi, Feurstein Simone, Kesserwan Chimene, Mohan Shruthi, Pineda-Alvarez Daniel E, Godley Lucy A
Department of Laboratory Medicine, University of Washington, Seattle, WA
Department of Pediatrics/Hematology-Oncology, Baylor College of Medicine, Houston, TX.
Haematologica. 2020 Apr;105(4):870-887. doi: 10.3324/haematol.2018.214221. Epub 2020 Mar 12.
The broad use of next-generation sequencing and microarray platforms in research and clinical laboratories has led to an increasing appreciation of the role of germline mutations in genes involved in hematopoiesis and lineage differentiation that contribute to myeloid neoplasms. Despite implementation of the American College of Medical Genetics and Genomics and Association for Molecular Pathology 2015 guidelines for sequence variant interpretation, the number of variants deposited in ClinVar, a genomic repository of genotype and phenotype data, and classified as having uncertain significance or being discordantly classified among clinical laboratories remains elevated and contributes to indeterminate or inconsistent patient care. In 2018, the American Society of Hematology and the Clinical Genome Resource co-sponsored the Myeloid Malignancy Variant Curation Expert Panel to develop rules for classifying gene variants associated with germline predisposition to myeloid neoplasia. Herein, we demonstrate application of our rules developed for the gene to variants in six examples to show how we would classify them within the proposed framework.
下一代测序和微阵列平台在研究和临床实验室中的广泛应用,使得人们越来越认识到种系突变在参与造血和谱系分化的基因中的作用,这些基因与髓系肿瘤的发生有关。尽管美国医学遗传学与基因组学学会和分子病理学协会实施了2015年序列变异解读指南,但在ClinVar(一个基因型和表型数据的基因组库)中存入的、被分类为意义不明确或在临床实验室之间分类不一致的变异数量仍然居高不下,这导致了患者护理的不确定性或不一致性。2018年,美国血液学会和临床基因组资源共同发起了髓系恶性肿瘤变异评估专家小组,以制定与髓系肿瘤种系易感性相关的基因变异分类规则。在此,我们展示了我们为该基因制定的规则在六个实例变异中的应用,以说明我们将如何在提议的框架内对它们进行分类。