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导致太平洋牡蛎幼虫死亡的病原菌鉴定及基因组分析

Identification and Genome Analysis of Causing Mortality of Pacific Oyster () Larvae.

作者信息

Kim Hyoun Joong, Jun Jin Woo, Giri Sib Sankar, Chi Cheng, Yun Saekil, Kim Sang Guen, Kim Sang Wha, Han Se Jin, Kwon Jun, Oh Woo Taek, Lee Sung Bin, Kim Ji Hyung, Park Se Chang

机构信息

Laboratory of Aquatic Biomedicine, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul National University, Seoul 08826, Korea.

Department of Aquaculture, Korea National College of Agriculture and Fisheries, Jeonju 54874, Korea.

出版信息

Pathogens. 2020 Mar 11;9(3):206. doi: 10.3390/pathogens9030206.

Abstract

is known as a coral pathogen that also infects marine bivalve larvae worldwide. It is considered to be one of the major constraints in artificial marine bivalve seed production as it causes mortality. In this study, we first isolated and characterized a high virulent of designated as SNUTY-1 that was the cause of Pacific oyster larvae mortality in Korea. In the pathogenicity test, exposure to 2.14 × 10 CFU/mL for 24 h caused mortality to 88.65 ± 2.4% of the tested healthy Pacific oyster larvae. SNUTY-1 showed anti-microbial resistance to β-lactams, such as penicillins, cephalosporins, and carbapenems. We sequenced and assembled the complete genome of SNUTY-1 (5,842,676 bp), consisting of two chromosomes (Chr I and Chr II) and two plasmids (pSNUTY1 and pSNUTY2). The COG functional analysis confirmed that Chr I had more genes associated with basic cellular functions in comparison to Chr II. The results of the phylogenetic trees based on OrthoANI values indicated that the SNUTY-1 was closely related to strains. SNUTY-1 had a unique plasmid (pSNUTY2), which could mean that the Korean isolate is different from other sequenced strains from different geographical origins. Toxic proteins such as cytolysin/hemolysin and extracellular metalloprotease genes were encoded on Chr I and Chr II of SNUTY-1. These data facilitate the control of infections in aquaculture by providing valuable insights into the biodiversity of this organism and valuable information for the study of virulence factors.

摘要

被认为是一种珊瑚病原体,在全球范围内也感染海洋双壳贝类幼虫。它被视为人工养殖海洋双壳贝类苗种生产的主要限制因素之一,因为它会导致死亡。在本研究中,我们首先分离并鉴定了一种高毒力的菌株,命名为SNUTY-1,它是韩国太平洋牡蛎幼虫死亡的原因。在致病性试验中,暴露于2.14×10 CFU/mL 24小时导致88.65±2.4%的受试健康太平洋牡蛎幼虫死亡。SNUTY-1对β-内酰胺类抗生素(如青霉素、头孢菌素和碳青霉烯类)表现出抗药性。我们对SNUTY-1的完整基因组(5,842,676 bp)进行了测序和组装,该基因组由两条染色体(Chr I和Chr II)和两个质粒(pSNUTY1和pSNUTY2)组成。COG功能分析证实,与Chr II相比,Chr I有更多与基本细胞功能相关的基因。基于OrthoANI值的系统发育树结果表明,SNUTY-1与 菌株密切相关。SNUTY-1有一个独特的质粒(pSNUTY2),这可能意味着韩国分离株与来自不同地理区域的其他已测序 菌株不同。细胞溶素/溶血素和细胞外金属蛋白酶基因等毒性蛋白在SNUTY-1的Chr I和Chr II上编码。这些数据通过提供对该生物体生物多样性的宝贵见解以及毒力因子研究的有价值信息,有助于控制水产养殖中的 感染。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f07e/7157721/2b3c94e4ff8f/pathogens-09-00206-g001.jpg

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