Berezhkovskii Alexander M, Dagdug Leonardo, Bezrukov Sergey M
Section on Molecular Transport, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892, United States.
Mathematical and Statistical Computing Laboratory, Office of Intramural Research, Center for Information Technology, National Institutes of Health, Bethesda, Maryland 20892, United States.
J Phys Chem B. 2020 Mar 26;124(12):2305-2310. doi: 10.1021/acs.jpcb.9b09595. Epub 2020 Mar 16.
A transition path is a part of a one-dimensional trajectory of a diffusing particle, which starts from point and is terminated as soon as it comes to point for the first time. It is the trajectory's final segment that leaves point and goes to point without returning to point . The duration of this segment is called transition path time or, alternatively, direct transit time. We study the mean transition path time in monotonically increasing entropy potentials of the narrowing cones in spaces of different dimensions. We find that this time, normalized to its value in the absence of the potential, monotonically increases with the barrier height for the entropy potential of a narrowing two-dimensional cone, is independent of the barrier height for a narrowing three-dimensional cone, and monotonically decreases with the barrier height for narrowing cones in spaces of higher dimensions. Moreover, we show that as the barrier height tends to infinity, the normalized mean transition path time approaches its universal limiting value /3, where = 2, 3, 4, ... is the space dimension. This is in sharp contrast to the asymptotic behavior of this quantity in the case of a linear potential of mean force, for which it approaches zero in this limit.
一条跃迁路径是扩散粒子一维轨迹的一部分,它从点开始,一旦首次到达点就终止。它是轨迹的最后一段,离开点并前往点且不再回到点。这段的持续时间称为跃迁路径时间,或者也称为直接穿越时间。我们研究了不同维度空间中变窄圆锥的单调增加熵势中的平均跃迁路径时间。我们发现,该时间相对于其在无势情况下的值进行归一化后,对于变窄二维圆锥的熵势,它随势垒高度单调增加;对于变窄三维圆锥,它与势垒高度无关;对于更高维度空间中的变窄圆锥,它随势垒高度单调减少。此外,我们表明,当势垒高度趋于无穷大时,归一化平均跃迁路径时间趋近于其通用极限值 /3,其中 = 2, 3, 4, ... 是空间维度。这与平均力线性势情况下该量的渐近行为形成鲜明对比,在那种情况下它在此极限下趋近于零。