Chen Zitao, Pan Xiangchun, Kong Yaru, Jiang Yao, Zhong Yuyi, Zhang Hao, Zhang Zhe, Yuan Xiaolong, Li Jiaqi
National Engineering Research Centre for Breeding Swine Industry, Guangdong Provincial Key Laboratory of Agro-Animal Genomics and Molecular Breeding, College of Animal Science, South China Agricultural University, Guangzhou, China.
Front Genet. 2020 Feb 28;11:135. doi: 10.3389/fgene.2020.00135. eCollection 2020.
Being the center of the hypothalamus-pituitary-ovary (HPO) axis, the pituitary plays a key role in the onset of puberty. Recent studies show that circular RNAs (circRNAs) can perform as miRNA sponges to regulate development in animals. However, the function of pituitary-derived circRNAs in first estrus remains unclear in pigs. In this study, we performed a genome-wide identification and characterization of circRNAs using pituitaries from Landrace × Yorkshire crossbred pigs at three stages: pre-, in-, and post-puberty, to describe such pituitary-derived circRNAs in pigs. A total of 5148 circRNAs were found in the gilts' pituitaries, averaging 18 682 bp in genomic distance, which consisted of approximately 91% exonic, 6% intergenic, and 3% intronic circRNAs. Furthermore, 158 novel circRNAs were identified for the first time and classified as putative pituitary-specific circRNAs. Their expression levels during the onset of puberty, significantly exceeded those of the other circRNAs, and the parental genes of these putative pituitary-specific circRNAs were enriched in "ssc04917: prolactin signaling pathway," "ssc04080: neuroactive ligand-receptor interaction," and "ssc04728: dopaminergic synapse" pathways, all of which were consistent with pituitary functioning. Additionally, 17 differentially regulated circRNAs were found and investigated for their potential interaction with miRNAs, along with genes, by constructing a circRNA-targeted miRNA-gene network. Taken together, these results provide new insight into the circRNA-mediated timing of puberty in gilts at the pituitary level.
垂体作为下丘脑 - 垂体 - 卵巢(HPO)轴的中心,在青春期启动过程中发挥着关键作用。最近的研究表明,环状RNA(circRNA)可以作为miRNA海绵来调节动物的发育。然而,猪垂体来源的circRNA在初情期的功能仍不清楚。在本研究中,我们利用长白猪×大白猪杂交母猪在青春期前、青春期中和青春期后的垂体进行了circRNA的全基因组鉴定和表征,以描述猪垂体来源的circRNA。在后备母猪的垂体中总共发现了5148个circRNA,基因组距离平均为18682 bp,其中约91%为外显子circRNA,6%为基因间circRNA,3%为内含子circRNA。此外,首次鉴定出158个新的circRNA,并将其归类为假定的垂体特异性circRNA。它们在青春期启动期间的表达水平显著超过其他circRNA,这些假定的垂体特异性circRNA的亲本基因在“ssc04917:催乳素信号通路”、“ssc04080:神经活性配体 - 受体相互作用”和“ssc04728:多巴胺能突触”通路中富集,所有这些都与垂体功能一致。此外,通过构建circRNA靶向的miRNA - 基因网络,发现了17个差异调节的circRNA,并研究了它们与miRNA以及基因的潜在相互作用。综上所述,这些结果为垂体水平上circRNA介导的后备母猪青春期时间调控提供了新的见解。