Sandholu Anand S, Mujawar Sharmila P, Ramakrishnan Krithika, Thulasiram Hirekodathakallu V, Kulkarni Kiran
Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, Maharashtra, India.
Academy of Scientific and Innovative Research (AcSIR), CSIR-National Chemical Laboratory, Pune, Maharashtra, India.
Proteins. 2020 Sep;88(9):1197-1206. doi: 10.1002/prot.25891. Epub 2020 Mar 26.
Conversion of 10-hydroxygeraniol to 10-oxogeranial is a crucial step in iridoid biosynthesis. This reaction is catalyzed by a zinc-dependent alcohol dehydrogenase, 10-hydroxygeraniol dehydrogenase, belonging to the family of medium-chain dehydrogenase/reductase (MDR). Here, we report the crystal structures of a novel 10-hydroxygeraniol dehydrogenase from Catharanthus roseus in its apo and nicotinamide adenine dinucleotide phosphate (NADP ) bound forms. Structural analysis and docking studies reveal how subtle conformational differences of loops L1, L2, L3, and helix α9' at the orifice of the catalytic site confer differential activity of the enzyme toward various substrates, by modulating the binding pocket shape and volume. The present study, first of its kind, provides insights into the structural basis of substrate specificity of MDRs specific to linear substrates. Furthermore, comparison of apo and NADP bound structures suggests that the enzyme adopts open and closed states to facilitate cofactor binding.
10-羟基香叶醇转化为10-氧代香叶醛是环烯醚萜生物合成中的关键步骤。该反应由一种锌依赖性醇脱氢酶——10-羟基香叶醇脱氢酶催化,它属于中链脱氢酶/还原酶(MDR)家族。在此,我们报道了来自长春花的一种新型10-羟基香叶醇脱氢酶的晶体结构,其分别处于无辅基形式和结合烟酰胺腺嘌呤二核苷酸磷酸(NADP⁺)的形式。结构分析和对接研究揭示了催化位点开口处的环L1、L2、L3以及螺旋α9'的细微构象差异如何通过调节结合口袋的形状和体积,赋予该酶对各种底物的不同活性。本研究首次为线性底物特异性的MDRs的底物特异性结构基础提供了见解。此外,无辅基结构与结合NADP⁺结构的比较表明,该酶通过采取开放和闭合状态来促进辅因子结合。