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基于基因变异解读的基因证据审查,探讨常染色体显性遗传疾病中 ADAMTS 家族基因的基因组特征和突变谱。

Genomic Landscape and Mutational Spectrum of ADAMTS Family Genes in Mendelian Disorders Based on Gene Evidence Review for Variant Interpretation.

机构信息

Department of Pharmacology, Brain Korea 21 PLUS Project for Medical Sciences, Yonsei University College of Medicine, Seoul 03722, Korea.

Department of Medicine, Physician-Scientist Program, Yonsei University Graduate School of Medicine, Seoul 03722, Korea.

出版信息

Biomolecules. 2020 Mar 13;10(3):449. doi: 10.3390/biom10030449.

Abstract

ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) are a family of multidomain extracellular protease enzymes with 19 members. A growing number of ADAMTS family gene variants have been identified in patients with various hereditary diseases. To understand the genomic landscape and mutational spectrum of ADAMTS family genes, we evaluated all reported variants in the ClinVar database and Human Gene Mutation Database (HGMD), as well as recent literature on Mendelian hereditary disorders associated with ADAMTS family genes. Among 1089 variants in 14 genes reported in public databases, 307 variants previously suggested for pathogenicity in Mendelian diseases were comprehensively re-evaluated using the American College of Medical Genetics and Genomics (ACMG) 2015 guideline. A total of eight autosomal recessive genes were annotated as being strongly associated with specific Mendelian diseases, including two recently discovered genes ( and ) for their causality in congenital diseases (nephronophthisis-related ciliopathy and nonsyndromic heart valve disease, respectively). Clinical symptoms and affected organs were extremely heterogeneous among hereditary diseases caused by ADAMTS family genes, indicating phenotypic heterogeneity despite their structural and functional similarity. was suggested as presenting undiscovered pathogenic mutations responsible for novel Mendelian disorders. Our study is the first to highlight the genomic landscape of ADAMTS family genes, providing an appropriate genetic approach for clinical use.

摘要

整合素和金属蛋白酶与血小板反应蛋白基序(ADAMTS)是一类具有 19 个成员的多功能细胞外蛋白酶家族。越来越多的 ADAMTS 家族基因变异已在各种遗传性疾病患者中被发现。为了了解 ADAMTS 家族基因的基因组景观和突变谱,我们评估了 ClinVar 数据库和人类基因突变数据库(HGMD)中所有报告的变体,以及与 ADAMTS 家族基因相关的孟德尔遗传性疾病的最新文献。在公共数据库中报告的 14 个基因中的 1089 个变体中,使用美国医学遗传学与基因组学学院(ACMG)2015 指南,对先前在孟德尔疾病中提示致病性的 307 个变体进行了全面重新评估。总共 8 个常染色体隐性基因被注释为与特定的孟德尔疾病密切相关,包括最近发现的两个基因( 和 ),它们分别与先天性疾病(肾单位纤毛相关的纤毛病和非综合征性心脏瓣膜病)有关。ADAMTS 家族基因引起的遗传性疾病的临床症状和受影响的器官极为不同,表明尽管结构和功能相似,但存在表型异质性。 被认为存在未发现的致病性突变,导致新的孟德尔疾病。我们的研究首次强调了 ADAMTS 家族基因的基因组景观,为临床应用提供了适当的遗传方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7416/7175297/745495ee9e0f/biomolecules-10-00449-g001.jpg

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