Wang Wei, He Ying, Zhao Qi, Zhao Xiaodong, Li Zhihong
Department of Gastroenterology, Dongzhimen Hospital, Beijing University of Chinese Medicine, Beijing 100700, P.R. China.
Hospital of Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan 610075, P.R. China.
Biomed Rep. 2020 Apr;12(4):178-192. doi: 10.3892/br.2020.1281. Epub 2020 Feb 20.
Gastric cancer (GC) is one of the most common types of cancer worldwide. Patients must be identified at an early stage of tumor progression for treatment to be effective. The aim of the present study was to identify potential biomarkers with diagnostic value in patients with GC. To examine potential therapeutic targets for GC, four Gene Expression Omnibus (GEO) datasets were downloaded and screened for differentially expressed genes (DEGs). Gene Ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were subsequently performed to study the function and pathway enrichment of the identified DEGs. A protein-protein interaction (PPI) network was constructed. The CytoHubba plugin of Cytoscape was used to calculate the degree of connectivity of proteins in the PPI network, and the two genes with the highest degree of connectivity were selected for further analysis. Additionally, the two DEGs with the largest and smallest log Fold Change values were selected. These six key genes were further examined using Oncomine and the Kaplan-Meier plotter platform. A total of 99 upregulated and 172 downregulated genes common to all four GEO datasets were screened. The DEGs were primarily enriched in the Biological Process terms: 'extracellular matrix organization', 'collagen catabolic process' and 'cell adhesion'. These three KEGG pathways were significantly enriched in the categories: 'ECM-receptor interaction', 'protein digestion and absorption', and 'focal adhesion'. Based on Oncomine, expression of and were downregulated in GC, whereas expression of the other genes were all upregulated. The Kaplan-Meier plotter platform confirmed that upregulated expression of the identified key genes was significantly associated with worse overall survival of patients with GC. The results of the present study suggest that , , and may be potential biomarkers and therapeutic targets for GC. Additional studies are required to explore the potential value of and in the treatment of GC.
胃癌(GC)是全球最常见的癌症类型之一。必须在肿瘤进展的早期阶段识别出患者,治疗才会有效。本研究的目的是在胃癌患者中识别具有诊断价值的潜在生物标志物。为了研究胃癌的潜在治疗靶点,下载了四个基因表达综合数据库(GEO)数据集,并筛选差异表达基因(DEG)。随后进行基因本体论和京都基因与基因组百科全书(KEGG)分析,以研究已识别DEG的功能和通路富集情况。构建了蛋白质-蛋白质相互作用(PPI)网络。使用Cytoscape的CytoHubba插件计算PPI网络中蛋白质的连接度,并选择连接度最高的两个基因进行进一步分析。此外,选择log倍数变化值最大和最小的两个DEG。使用Oncomine和Kaplan-Meier绘图平台对这六个关键基因进行进一步研究。在所有四个GEO数据集中共筛选出99个上调基因和172个下调基因。这些DEG主要富集在生物学过程术语:“细胞外基质组织”、“胶原蛋白分解代谢过程”和“细胞粘附”中。这三个KEGG通路在“细胞外基质-受体相互作用”、“蛋白质消化和吸收”以及“粘着斑”类别中显著富集。基于Oncomine,[具体基因1]和[具体基因2]在胃癌中表达下调,而其他基因的表达均上调。Kaplan-Meier绘图平台证实,所识别关键基因的上调表达与胃癌患者较差的总生存期显著相关。本研究结果表明,[具体基因1]、[具体基因2]、[具体基因3]和[具体基因4]可能是胃癌的潜在生物标志物和治疗靶点。需要进一步研究来探索[具体基因1]和[具体基因2]在胃癌治疗中的潜在价值。