Shao Chunfu, Shao Qiang, Wang Xiaoyi, Ling Jun, Guo Xiao, Ning Yulin, Dai Yujie, Jia Shiru, Qiao Yuanyuan, Li Changwen, Zhao Kai
State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, No.29 of 13th Street, TEDA, Tianjin, 300457, PR China.
Tasly Academy, Tasly Group, Tianjin, 300410, PR China.
Data Brief. 2020 Feb 26;29:105329. doi: 10.1016/j.dib.2020.105329. eCollection 2020 Apr.
This data article contains the chemical structure of cellobiose, which was chosen as the model molecule of cellulose. A brief diagram of the reaction system established by Packmol containing celluloses, hydroxyl radicals and water for ReaxFF kinetic simulation as well as the energy change curve obtained during the optimization process were provided. The total ion current (TIC) and product species of the reaction of cellobiose with Fenton's regent given by GC-MS were displayed, respectively. A brief diagram of the OH-abstraction of cellobiose triggered by hydrated hydrogen radical was shown. Additionally, chemical structures of all transition states in pathways 1-4 of the reaction of cellobiose with •OH carried out by means of quantum calculation using Gaussian 09 are shown. Some key frames in reaction pathway 1 obtained by ReaxFF simulation and the thermodynamic parameters for reaction pathways 1-4 were also listed successively. Interpretation of this data can be found in a research article titled "Study on Cellulose Degradation Induced by Hydroxyl Radical with Cellobiose as a Model Using GC-MS, ReaxFF Simulation and DFT Computation" (Shao et al., 2020) [1].
本数据文章包含纤维二糖的化学结构,其被选为纤维素的模型分子。提供了由Packmol建立的用于ReaxFF动力学模拟的包含纤维素、羟基自由基和水的反应体系的简要示意图,以及优化过程中获得的能量变化曲线。分别展示了气相色谱-质谱联用仪(GC-MS)给出的纤维二糖与芬顿试剂反应的总离子流(TIC)和产物种类。展示了水合氢自由基引发的纤维二糖氢原子提取的简要示意图。此外,还展示了使用高斯09通过量子计算得到的纤维二糖与•OH反应途径1-4中所有过渡态的化学结构。还依次列出了通过ReaxFF模拟得到的反应途径1中的一些关键帧以及反应途径1-4的热力学参数。对这些数据的解释可在一篇题为《以纤维二糖为模型利用GC-MS、ReaxFF模拟和DFT计算研究羟基自由基诱导的纤维素降解》的研究文章中找到(邵等人,2020年)[1]。