Nanotechnology Laboratory, IRCCS Istituto Tumori "Giovanni Paolo II", Bari, Italy.
IFOM-The FIRC Institute of Molecular Oncology, Milan, Italy.
PLoS One. 2020 Mar 19;15(3):e0224002. doi: 10.1371/journal.pone.0224002. eCollection 2020.
Reproducibility of results is essential for a well-designed and conducted experiment. Several reasons may originate failure in reproducing data, such as selective reporting, low statistical power, or poor analysis. In this study, we used PEG6000 samples from different distributors and tested their capability inducing spheroid formation upon surface coating. MALDI-MS, NMR, FTIR, and Triple SEC analysis of the different PEG60000s showed nearly identical physicochemical properties different, with only minor differences in mass and hydrodynamic radius, and AFM analysis showed no significant differences in the surface coatings obtained with the available PEG6000s. Despite these similarities, just one showed a highly reproducible formation of spheroids with different cell lines, such as HT-29, HeLa, Caco2, and PANC-1. Using the peculiar PEG6000 sample and a reference PEG6000 chosen amongst the others as control, we tested the effect of the cell/PEG interaction by incubating cells in the PEG solution prior to cell plating. These experiments indicate that the spheroid formation is due to direct interaction of the polymer with the cells rather than by interaction of cells with the coated surfaces. The experiments point out that for biological entities, such as cells or tissues, even very small differences in impurities or minimal variations in the starting product can have a very strong impact on the reproducibility of data.
结果的可重复性对于设计和进行良好的实验至关重要。导致数据无法重现的原因有很多,例如选择性报告、低统计效力或分析不当。在本研究中,我们使用了来自不同供应商的 PEG6000 样品,并测试了它们在表面涂层诱导球体形成的能力。不同 PEG6000 的 MALDI-MS、NMR、FTIR 和 Triple SEC 分析表明其物理化学性质几乎相同,仅在质量和流体力学半径上存在微小差异,AFM 分析表明,用现有的 PEG6000 获得的表面涂层没有明显差异。尽管存在这些相似之处,但只有一种 PEG6000 能够高度重现与不同细胞系(如 HT-29、HeLa、Caco2 和 PANC-1)的球体形成。使用特殊的 PEG6000 样品和从其他样品中选择的参考 PEG6000 作为对照,我们通过在细胞接种前将细胞在 PEG 溶液中孵育来测试细胞/PEG 相互作用的效果。这些实验表明,球体的形成是由于聚合物与细胞的直接相互作用,而不是由于细胞与涂层表面的相互作用。这些实验表明,对于生物实体,如细胞或组织,即使是杂质或起始产物中的微小差异也会对数据的可重复性产生非常大的影响。