从北莱恩群岛帕尔米拉环礁分离出的OCN044菌株的基因组序列草图
Draft Genome Sequence of sp. Strain OCN044, Isolated from Palmyra Atoll, Northern Line Islands.
作者信息
Loughran Rachel M, Esquivel Abigail R, Deadmond Monica C, Koyack Marc J, Paddock Brie E, O'Hanlon Samantha M, Ushijima Blake, Saw Jimmy H, Videau Patrick
机构信息
Department of Biology, Southern Oregon University, Ashland, Oregon, USA.
Department of Chemistry, Southern Oregon University, Ashland, Oregon, USA.
出版信息
Microbiol Resour Announc. 2020 Mar 19;9(12):e00042-20. doi: 10.1128/MRA.00042-20.
Abstract
sp. strain OCN044 is a Gram-negative gammaproteobacterium found in marine environments. Presented here is the whole-draft genome sequence of nonpathogenic sp. strain OCN044, isolated from a healthy colony off the western reef terrace of Palmyra Atoll.
摘要
菌株OCN044是一种在海洋环境中发现的革兰氏阴性γ-变形菌。本文展示的是从帕尔米拉环礁西部礁台的一个健康菌落中分离出的非致病性菌株OCN044的全基因组草图序列。
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本文引用的文献
1
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2
A Vibrio owensii strain as the causative agent of AHPND in cultured shrimp, Litopenaeus vannamei.一种欧文氏弧菌菌株引起凡纳滨对虾养殖中急性肝胰腺坏死病。
J Invertebr Pathol. 2018 Mar;153:156-164. doi: 10.1016/j.jip.2018.02.005. Epub 2018 Feb 7.
3
Vibrio vulnificus: new insights into a deadly opportunistic pathogen.创伤弧菌：一种致命机会性病原体的新见解。
Environ Microbiol. 2018 Feb;20(2):423-430. doi: 10.1111/1462-2920.13955. Epub 2017 Dec 29.
4
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5
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
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6
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