Guo Wenlei, Chen Junhao, Li Jian, Huang Jianqin, Wang Zhengjia, Lim Kean-Jin
State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Lin'an District, 311300 Hangzhou, Zhejiang China.
Hortic Res. 2020 Mar 15;7:35. doi: 10.1038/s41438-020-0256-x. eCollection 2020.
Juglandaceae species are plants of great economic value and have been cultivated, domesticated, and utilized by human society for a long time. Their edible, nutrient-rich nuts and tough, durable wood have attracted the attention of botanists and breeders. With the advent of the genomics era, genome sequencing of the Juglandaceae family has been greatly accelerated, and a large amount of data has been generated. In this paper, we introduce the Portal of Juglandaceae (PJU), a tool to bring all these data together. The PJU contains genomes, gene-coding sequences, protein sequences, various types of annotation information, expression data, and miRNA data, which are configured with BLAST, JBrowse, and our self-developed synteny analysis tool. The PJU has a user-friendly and straightforward interface that performs a variety of query tasks with a few simple operations. In the future, we hope that the PJU will serve as a hub for the study of the Juglandaceae family.
胡桃科植物具有很高的经济价值,长期以来一直被人类社会种植、驯化和利用。它们可食用、营养丰富的坚果以及坚硬耐用的木材吸引了植物学家和育种者的关注。随着基因组学时代的到来,胡桃科的基因组测序工作大大加速,产生了大量数据。在本文中,我们介绍了胡桃科门户(PJU),这是一个将所有这些数据整合在一起的工具。PJU包含基因组、基因编码序列、蛋白质序列、各种类型的注释信息、表达数据和miRNA数据,并配置了BLAST、JBrowse和我们自主开发的共线性分析工具。PJU拥有用户友好且简单直观的界面,通过一些简单操作就能执行各种查询任务。未来,我们希望PJU能成为胡桃科研究的中心枢纽。