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在一名患有玻璃体视网膜病变的伊朗个体中发现的FZD4基因新的致病变异c.1237T>G的特征分析,该变异呈现出新的遗传方式。

Characterization of a novel pathogenic variation c.1237T>G in the FZD4 gene presenting new inheritance from an Iranian individual suffering vitreoretinopathy.

作者信息

Zamani Mina, Shariati Gholamreza, Seifi Tahereh, Sedaghat Alireza, Galehdari Hamid

机构信息

Department of Genetics, Faculty of Sciences, Shahid Chamran University of Ahvaz, Ahvaz, Iran.

Narges Genetics Diagnostic Laboratory, Ahvaz, Iran.

出版信息

Intractable Rare Dis Res. 2020 Feb;9(1):48-53. doi: 10.5582/irdr.2019.01109.

Abstract

Whole Exome Sequencing (WES) has been used increasingly in genetic determination of various known and unknown genetic disorders. Various genes are involved in the development of the vascular network of retina. Assessment of a collection of these genes could be provided by WES. Here we used WES for a patient suffering vitreoretinopathy to detect the disease causing variant. Sanger sequencing has been applied for variant verification and allelic segregation. After analysis of WES data we found a new variant c.1237T>G in the locus which causes retinopathy of prematurity and exudative vitreoretinopathy (MIM number: 133780). Sanger sequencing showed this single nucleotide variation inherited as homozygous in the patient and heterozygous in her unaffected parents. Notably, bioinformatics analysis predicted the variant as disease causing and it has not been described yet in home datasets and public SNP databases. mutations are mostly inherited as autosomal dominant traits. Our findings showed the first autosomal recessive inheritance of the FZD4 gene related retinopathy. On the other hand, our data shed light on the significance of an Exome sequencing application as a genetic test to identify and characterize the comprehensive spectrum of genetic variation and classification for patients with retinopathies.

摘要

全外显子组测序(WES)在各种已知和未知遗传性疾病的基因检测中应用越来越广泛。多种基因参与视网膜血管网络的发育。WES可以对这些基因进行评估。在此,我们对一名患有玻璃体视网膜病变的患者使用WES来检测致病变异。采用桑格测序法进行变异验证和等位基因分离分析。分析WES数据后,我们在该基因座发现了一个新的变异c.1237T>G,它会导致早产儿视网膜病变和渗出性玻璃体视网膜病变(MIM编号:133780)。桑格测序显示该单核苷酸变异在患者中呈纯合子遗传,在其未受影响的父母中呈杂合子遗传。值得注意的是,生物信息学分析预测该变异具有致病性,且在本地数据集和公共SNP数据库中尚未见报道。 突变大多作为常染色体显性性状遗传。我们的研究结果显示了FZD4基因相关视网膜病变的首例常染色体隐性遗传。另一方面,我们的数据揭示了外显子组测序作为一种基因检测手段,对于识别和表征视网膜病变患者遗传变异的全面谱系及分类的重要性。

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