Mycology and Nematology Genetic Diversity and Biology Laboratory, United States Department of Agriculture-Agricultural Research Service, 10300 Baltimore Avenue, Building 010A, Beltsville, MD, U.S.A.
Department of Biological Sciences, Mississippi State University, 295 Lee Boulevard, Mississippi State, MS, U.S.A.
Phytopathology. 2020 Jun;110(6):1180-1188. doi: 10.1094/PHYTO-12-19-0478-A. Epub 2020 Apr 17.
is the causal agent of chestnut blight, a fungal disease that almost entirely eliminated mature American chestnut from North America over a 50-year period. Here, we formally report the genome of EP155 using a Sanger shotgun sequencing approach. After finishing and integration with simple-sequence repeat markers, the assembly was 43.8 Mb in 26 scaffolds (L = 5; N = 4.0Mb). Eight chromosomes are predicted: five scaffolds have two telomeres and six scaffolds have one telomere sequence. In total, 11,609 gene models were predicted, of which 85% show similarities to other proteins. This genome resource has already increased the utility of a fundamental plant pathogen experimental system through new understanding of the fungal vegetative incompatibility system, with significant implications for enhancing mycovirus-based biological control.
是栗疫病的病原体,这种真菌病害在 50 年内几乎使北美成熟的美洲栗灭绝。在这里,我们使用 Sanger shotgun 测序方法正式报告 EP155 的基因组。完成后,与简单重复序列标记整合,组装得到 26 个支架的 43.8 Mb(L = 5;N = 4.0Mb)。预测到 8 条染色体:5 个支架有两个端粒,6 个支架有一个端粒序列。总共预测到 11609 个基因模型,其中 85%与其他蛋白质具有相似性。这个基因组资源已经通过对真菌营养体不亲和系统的新认识,提高了基础植物病原体实验系统的实用性,对增强基于真菌病毒的生物防治具有重要意义。