Department of Biotechnology, School of Bio Sciences and Technology, VIT University, Vellore, India.
J Basic Microbiol. 2020 Jun;60(6):471-483. doi: 10.1002/jobm.201900628. Epub 2020 Mar 24.
An organism exposed to a plethora of environmental perturbations undergoes proteomic changes which enable the characterization of total proteins in it. Much of the proteomic information is obtained from genomic data. Additional information on the proteome such as posttranslational modifications, protein-protein interactions, protein localization, metabolic pathways, and so on are deduced using proteomic tools which genomics and transcriptomics fail to offer. The proteomic analysis allows identification of precise changes in proteins, which in turn solve the complexity of microbial population providing insights into the microbial metabolism, cellular pathways, and behavior of microorganisms in new environments. Furthermore, they provide clues for the exploitation of their special features for biotechnological applications. Numerous techniques for the analysis of microbial proteome such as electrophoretic, chromatographic, mass spectrometric-based methods as well as quantitative proteomics are available which facilitate protein separation, expression, identification, and quantification of proteins. An understanding of the potential of each of the proteomic tools has created a significant impact on diverse microbiological aspects and the same has been discussed in this review.
生物体暴露于大量环境胁迫下会发生蛋白质组变化,从而能够对其中的总蛋白质进行特征描述。大量蛋白质组信息来自基因组数据。使用基因组学和转录组学无法提供的蛋白质组工具,可以推断出有关蛋白质组的其他信息,如翻译后修饰、蛋白质-蛋白质相互作用、蛋白质定位、代谢途径等。蛋白质组分析可以识别蛋白质的精确变化,这反过来又解决了微生物种群的复杂性问题,为微生物代谢、细胞途径以及微生物在新环境中的行为提供了深入了解。此外,它们还为利用其特殊功能进行生物技术应用提供了线索。目前已有许多用于分析微生物蛋白质组的技术,如电泳、色谱、基于质谱的方法以及定量蛋白质组学等,这些技术有助于蛋白质的分离、表达、鉴定和定量。对每种蛋白质组工具的潜力的理解对不同的微生物学方面产生了重大影响,本文对此进行了讨论。