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与南佛罗里达州前段发育异常相关的基因变异谱

Spectrum of Genetic Variants Associated with Anterior Segment Dysgenesis in South Florida.

作者信息

Thanikachalam Saradadevi, Hodapp Elizabeth, Chang Ta C, Swols Dayna Morel, Cengiz Filiz B, Guo Shengru, Zafeer Mohammad F, Seyhan Serhat, Bademci Guney, Scott William K, Grajewski Alana, Tekin Mustafa

机构信息

John P. Hussmann Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL 33136, USA.

Bascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL 33136, USA.

出版信息

Genes (Basel). 2020 Mar 26;11(4):350. doi: 10.3390/genes11040350.

Abstract

Anterior segment dysgenesis (ASD) comprises a wide spectrum of developmental conditions affecting the cornea, iris, and lens, which may be associated with abnormalities of other organs. To identify disease-causing variants, we performed exome sequencing in 24 South Florida families with ASD. We identified 12 likely causative variants in 10 families (42%), including single nucleotide or small insertion-deletion variants in B3GLCT, BMP4, CYP1B1, FOXC1, FOXE3, GJA1, PXDN, and TP63, and a large copy number variant involving PAX6. Four variants were novel. Each variant was detected only in one family. Likely causative variants were detected in 1 out of 7 black and 9 out of 17 white families. In conclusion, exome sequencing for ASD allows us to identify a wide spectrum of rare DNA variants in South Florida. Further studies will explore missing variants, especially in the black communities.

摘要

前段发育异常(ASD)包括一系列影响角膜、虹膜和晶状体的发育状况,这些状况可能与其他器官的异常有关。为了鉴定致病变异,我们对24个患有ASD的南佛罗里达家庭进行了外显子组测序。我们在10个家庭(42%)中鉴定出12个可能的致病变异,包括B3GLCT、BMP4、CYP1B1、FOXC1、FOXE3、GJA1、PXDN和TP63中的单核苷酸或小插入缺失变异,以及一个涉及PAX6的大片段拷贝数变异。四个变异是新发现的。每个变异仅在一个家庭中检测到。在7个黑人家庭中有1个以及17个白人家庭中有9个检测到可能的致病变异。总之,对ASD进行外显子组测序使我们能够在南佛罗里达鉴定出广泛的罕见DNA变异。进一步的研究将探索缺失的变异,特别是在黑人社区。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f84/7230952/a4dbf8ebff82/genes-11-00350-g001.jpg

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