SynergyFinder 2.0:多药物组合协同作用的可视化分析。

SynergyFinder 2.0: visual analytics of multi-drug combination synergies.

机构信息

Institute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, FI-00290 Helsinki, Finland.

Helsinki Institute for Information Technology (HIIT), Department of Computer Science, Aalto University, FI-02150 Espoo, Finland.

出版信息

Nucleic Acids Res. 2020 Jul 2;48(W1):W488-W493. doi: 10.1093/nar/gkaa216.

Abstract

SynergyFinder (https://synergyfinder.fimm.fi) is a stand-alone web-application for interactive analysis and visualization of drug combination screening data. Since its first release in 2017, SynergyFinder has become a widely used web-tool both for the discovery of novel synergistic drug combinations in pre-clinical model systems (e.g. cell lines or primary patient-derived cells), and for better understanding of mechanisms of combination treatment efficacy or resistance. Here, we describe the latest version of SynergyFinder (release 2.0), which has extensively been upgraded through the addition of novel features supporting especially higher-order combination data analytics and exploratory visualization of multi-drug synergy patterns, along with automated outlier detection procedure, extended curve-fitting functionality and statistical analysis of replicate measurements. A number of additional improvements were also implemented based on the user requests, including new visualization and export options, updated user interface, as well as enhanced stability and performance of the web-tool. With these improvements, SynergyFinder 2.0 is expected to greatly extend its potential applications in various areas of multi-drug combinatorial screening and precision medicine.

摘要

SynergyFinder(https://synergyfinder.fimm.fi)是一个独立的网络应用程序,用于交互式分析和可视化药物组合筛选数据。自 2017 年首次发布以来,SynergyFinder 已成为一种广泛使用的网络工具,用于在临床前模型系统(例如细胞系或原代患者来源细胞)中发现新的协同药物组合,并更好地了解组合治疗效果或耐药性的机制。在这里,我们描述了 SynergyFinder 的最新版本(版本 2.0),它通过添加支持更高阶组合数据分析和多药物协同模式探索性可视化的新功能,以及自动异常值检测程序、扩展的曲线拟合功能和重复测量的统计分析,得到了广泛的升级。还根据用户的请求实施了许多其他改进,包括新的可视化和导出选项、更新的用户界面,以及增强了网络工具的稳定性和性能。通过这些改进,SynergyFinder 2.0 有望极大地扩展其在多药物组合筛选和精准医学等各个领域的潜在应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/59b6/7319457/3527f5b847ea/gkaa216fig1.jpg

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