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手性相互作用是用 l-DNA 适体替代 d-DNA 的决定性因素。

Chiral Interaction Is a Decisive Factor To Replace d-DNA with l-DNA Aptamers.

机构信息

State Key Laboratory of Medicinal Chemical Biology, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Centre for Analytical Sciences, College of Chemistry, Nankai University, Tianjin 300071, P. R. China.

Department of Chemistry & Biochemistry, Kent State University, Kent, Ohio 44242, United States.

出版信息

Anal Chem. 2020 May 5;92(9):6470-6477. doi: 10.1021/acs.analchem.9b05676. Epub 2020 Apr 16.

DOI:10.1021/acs.analchem.9b05676
PMID:32249564
Abstract

Nucleic acid aptamers have been widely used in various fields such as biosensing, DNA chip, and medical diagnosis. However, the high susceptibility of nucleic acids to ubiquitous nucleases reduces the biostability of aptamers and limits their applications in biological contexts. Therefore, improving the biostability of aptamers becomes an urgent need. Herein, we present a simple strategy to resolve this problem by directly replacing the d-DNA-based aptamers with left-handed l-DNA. By testing several reported aptamers against respective targets, we found that our proposed strategy stood up well for nonchiral small molecule targets (e.g., Hemin and cationic porphyrin) and chiral targets whose interactions with aptamers are chirality-independent (e.g., ATP). We also found that the l-DNA aptamers were indeed endowed with greatly improved biostability due to the extraordinary resistance of l-DNA to nuclease digestion. With respect to other small-molecule targets whose interactions with aptamers are chirality-dependent (e.g., kanamycin) and biomacromolecules (e.g., tyrosine kinase-7), however, the proposed strategy was not entirely effective likely due to the participation of the DNA backbone chirality into the target recognition. In spite of this limitation, this strategy indeed paves an easy way to screen highly biostable aptamers important for the applications in many fields.

摘要

核酸适体已广泛应用于生物传感、DNA 芯片和医学诊断等领域。然而,核酸对普遍存在的核酸酶的高敏感性降低了适体的生物稳定性,限制了它们在生物环境中的应用。因此,提高适体的生物稳定性成为当务之急。在这里,我们提出了一种简单的策略,通过直接将基于 d-DNA 的适体替换为左手 l-DNA 来解决这个问题。通过针对各自的靶标测试几种报道的适体,我们发现我们提出的策略对于非手性小分子靶标(例如血红素和阳离子卟啉)和与适体相互作用不依赖手性的手性靶标(例如 ATP)表现良好。我们还发现,由于 l-DNA 对核酸酶消化具有非凡的抗性,因此 l-DNA 适体确实具有大大提高的生物稳定性。然而,对于与适体相互作用依赖手性的其他小分子靶标(例如卡那霉素)和生物大分子(例如酪氨酸激酶-7),由于 DNA 骨架手性参与靶标识别,因此所提出的策略并不完全有效。尽管存在这种局限性,但该策略确实为筛选在许多领域应用中具有重要意义的高生物稳定性适体铺平了道路。

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