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渗透压效应表明,脱水作用于细胞色素c - 细胞色素c氧化酶复合物的形成,有助于特定电子传递途径的形成。

Osmotic pressure effects identify dehydration upon cytochrome c-cytochrome c oxidase complex formation contributing to a specific electron pathway formation.

作者信息

Sato Wataru, Hitaoka Seiji, Uchida Takeshi, Shinzawa-Itoh Kyoko, Yoshizawa Kazunari, Yoshikawa Shinya, Ishimori Koichiro

机构信息

Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-8628, Japan.

Institute for Materials Chemistry and Engineering, Kyushu University, Fukuoka 819-0315, Japan.

出版信息

Biochem J. 2020 Apr 30;477(8):1565-1578. doi: 10.1042/BCJ20200023.

Abstract

In the electron transfer (ET) reaction from cytochrome c (Cyt c) to cytochrome c oxidase (CcO), we determined the number and sites of the hydration water released from the protein surface upon the formation of the ET complex by evaluating the osmotic pressure dependence of kinetics for the ET from Cyt c to CcO. We identified that ∼20 water molecules were dehydrated in complex formation under turnover conditions, and systematic Cyt c mutations in the interaction site for CcO revealed that nearly half of the released hydration water during the complexation were located around Ile81, one of the hydrophobic amino acid residues near the exposed heme periphery of Cyt c. Such a dehydration dominantly compensates for the entropy decrease due to the association of Cyt c with CcO, resulting in the entropy-driven ET reaction. The energetic analysis of the interprotein interactions in the ET complex predicted by the docking simulation suggested the formation of hydrophobic interaction sites surrounding the exposed heme periphery of Cyt c in the Cyt c-CcO interface (a 'molecular breakwater'). Such sites would contribute to the formation of the hydrophobic ET pathway from Cyt c to CcO by blocking water access from the bulk water phase.

摘要

在从细胞色素c(Cyt c)到细胞色素c氧化酶(CcO)的电子转移(ET)反应中,我们通过评估Cyt c到CcO的ET动力学对渗透压的依赖性,确定了ET复合物形成时从蛋白质表面释放的水化水的数量和位点。我们发现,在周转条件下复合物形成过程中有约20个水分子脱水,并且对CcO相互作用位点进行的系统性Cyt c突变表明,复合物形成过程中释放的水化水近一半位于Ile81周围,Ile81是Cyt c暴露血红素周边附近的疏水氨基酸残基之一。这种脱水主要补偿了由于Cyt c与CcO缔合导致的熵降低,从而产生了熵驱动的ET反应。对接模拟预测的ET复合物中蛋白质间相互作用的能量分析表明,在Cyt c - CcO界面(一个“分子防波堤”)中,围绕Cyt c暴露血红素周边形成了疏水相互作用位点。这些位点将通过阻止大量水相中的水进入,有助于形成从Cyt c到CcO的疏水ET途径。

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