Alexandre Hermine, Truffaut Laura, Ducousso Alexis, Louvet Jean-Marc, Nepveu Gérard, Torres-Ruiz José M, Lagane Frédéric, Firmat Cyril, Musch Brigitte, Delzon Sylvain, Kremer Antoine
BIOGECO, INRA, Univ. Bordeaux, 33610 Cestas, France.
UMR SILVA, INRA, 54280 Champenoux, France.
Tree Genet Genomes. 2020 Feb 28;16. doi: 10.1007/s11295-019-1407-9.
Predicting the evolutionary potential of natural tree populations requires the estimation of heritability and genetic correlations among traits on which selection acts, as differences in evolutionary success between species may rely on differences for these genetic parameters. estimates are expected to be more accurate than measures done under controlled conditions which do not reflect the natural environmental variance.
The aim of the current study was to estimate three genetic parameters (i.e. heritability, evolvability and genetic correlations) in a natural mixed oak stand composed of and about 100 years old, for 58 traits of ecological and functional relevance (growth, reproduction, phenology, physiology, resilience, structure, morphology and defence).
First we estimated genetic parameters directly using realized genomic relatedness of adult trees and parentage relationships over two generations to estimate the traits additive variance. Secondly, we benefited from existing experiments (progeny tests and conservation collection) installed with the same populations, thus allowing comparisons of heritability estimates with more traditional methods.
Heritability and evolvability estimates obtained with different methods varied substantially and showed large confidence intervals, however we found that were less precise than estimates, and assessments over two generations (with deeper relatedness) improved estimates of heritability while large sampling sizes are needed for accurate estimations. At the biological level, heritability values varied moderately across different ecological and functional categories of traits, and genetic correlations among traits were conserved over the two species.
We identified limits for using realized genomic relatedness in natural stands to estimate the genetic variance, given the overall low variance of genetic relatedness and the rather low sampling sizes of currently used long term genetic plots in forestry. These limits can be overcome if larger sample sizes are considered, or if the approach is extended over the next generation.
预测天然树木种群的进化潜力需要估计选择作用所针对的性状之间的遗传力和遗传相关性,因为物种间进化成功的差异可能取决于这些遗传参数的差异。预计这些估计值要比在不反映自然环境方差的受控条件下所做的测量更为准确。
本研究的目的是在一个约100年树龄、由[具体树种1]和[具体树种2]组成的天然混合栎林分中,针对58个具有生态和功能相关性的性状(生长、繁殖、物候、生理、恢复力、结构、形态和防御),估计三个遗传参数(即遗传力、进化能力和遗传相关性)。
首先,我们通过成年树木的实际基因组亲缘关系和两代的亲子关系直接估计遗传参数,以估计性状的加性方差。其次,我们利用在相同种群中开展的现有[相关实验类型]实验(子代测试和保育收集),从而能够将[遗传力]估计值与更传统的方法进行比较。
用不同方法获得的遗传力和进化能力估计值差异很大,且显示出较大的置信区间,然而我们发现[某些估计值]不如[另一些估计值]精确,两代的评估(亲缘关系更深)改善了遗传力估计,但需要大样本量才能进行准确估计。在生物学层面,遗传力值在不同生态和功能类别的性状中变化适中,且两个物种的性状间遗传相关性保持一致。
鉴于遗传相关性的总体方差较低以及林业中目前使用的长期遗传样地的抽样规模相当小,我们确定了在天然林分中使用实际基因组亲缘关系估计遗传方差的局限性。如果考虑更大的样本量,或者如果将该方法扩展到下一代,这些局限性是可以克服的。