Department of Microbiology & Immunology, Columbia University Medical Center, New York, NY, USA.
Public Health Research Institute & Department of Microbiology and Molecular Genetics, New Jersey Medical School, Rutgers Biomedical and Health Sciences, Newark, NJ, USA.
FEBS J. 2020 Dec;287(24):5439-5463. doi: 10.1111/febs.15318. Epub 2020 Apr 23.
To investigate divalent metal ion (Me ) requirements in electrophilic biocatalysis, we compared Mg , Mn , Co , Zn , Cu , Ni , Cd , Ca , and Fe activities with 13 enzymes executing nucleotidyl and/or phosphoryl transfer. We find that each Me ion was highly catalytically active with one or more of the related enzymes. This result suggests that features of Me coordination at the active center, and/or the enzyme-mediated presentation of the reactants to the chelated Me , rather than the nature of the Me , determine the ability of the Me to support catalysis. At physiological pH, all the tested Me ions, with the exception of Mg , produced insoluble complexes with inorganic phosphate (P ) and bicarbonate ( ). These data suggest that early in the development of life, bioavailability and biocompatibility with these abundant cellular metabolites may have been decisive factors in the choice of Mg as the major ion for biocatalysis. Taking into account the concentrations of inorganic ions in the ancient environment in which the first cells emerged, as inferred from the 'chemistry conservation principle', the choice of Mg was predetermined prior to the origin of life.
为了研究亲电生物催化中二价金属离子(Me)的需求,我们比较了 13 种执行核苷酸和/或磷酸转移的酶中 Mg、Mn、Co、Zn、Cu、Ni、Cd、Ca 和 Fe 的活性。我们发现,每个 Me 离子都能高度催化一种或多种相关酶的反应。这一结果表明,活性中心处 Me 配位的特征,以及酶介导的将反应物呈现给螯合 Me 的方式,而不是 Me 的性质,决定了 Me 支持催化的能力。在生理 pH 下,除了 Mg 之外,所有测试的 Me 离子都会与无机磷酸盐(P)和碳酸氢盐(HCO3-)形成不溶性复合物。这些数据表明,在生命早期,生物利用度和与这些丰富的细胞代谢物的生物相容性可能是选择 Mg 作为生物催化主要离子的决定性因素。考虑到早期细胞出现时的古环境中无机离子的浓度,根据“化学守恒原理”,在生命起源之前,Mg 的选择就已经预先确定了。