Lund University, Skane University Hospital, Department of Clinical Sciences Lund, Neurology, Lund, Sweden.
Lund University, Skane University Hospital, Department of Clinical Sciences Lund, Neurology, Lund, Sweden.
Parkinsonism Relat Disord. 2020 Apr;73:72-84. doi: 10.1016/j.parkreldis.2020.02.015. Epub 2020 Mar 2.
New generation sequencing (NGS) genetic testing is a powerful diagnostic tool and is increasingly used in the clinical workup of patients, especially in unusual presentations or where a positive family history suggests heritable disease. This review addresses the NGS technologies Targeted sequencing (TS), Whole exome sequencing (WES), Whole genome sequencing (WGS), and the use of gene panels or gene lists for clinical diagnostic purposes. These methods primarily assess nucleotide sequence but can also detect copy number variants and many tandem repeat expansions, greatly simplifying diagnostic algorithms for movement disorders. Studies evaluating the efficacy of NGS in diagnosing movement disorders have reported a diagnostic yield of up to 10.1% for familial and 15.7% for early-onset PD, 11.7-37.5% for dystonia, 12.1-61.8% for ataxia/spastic paraplegia and 11.3-28% for combined movement disorders. Patient selection and stringency in the interpretation of the detected variants and genotypes affect diagnostic yield. Careful comparison of the patient's or family's disease features with the previously reported phenotype associated with the same variant or gene can avoid false-positive diagnoses, although some genes are implicated in various phenotypes. Moving from TS to WES and WGS increases the number of patients correctly diagnosed, but for many patients, a genetic cause cannot be identified today. However, new genetically defined entities are discovered at rapid pace, and genetic databases and our knowledge of genotype-phenotype correlations expand steadily. We discuss the need for clear communication of genetic results and suggest a list of aspects to consider when reporting neurogenetic disorders using NGS testing.
新一代测序(NGS)基因检测是一种强大的诊断工具,越来越多地用于患者的临床评估,尤其是在不常见的表现或阳性家族史提示遗传性疾病的情况下。本综述介绍了 NGS 技术靶向测序(TS)、外显子组测序(WES)、全基因组测序(WGS)以及基因面板或基因列表在临床诊断中的应用。这些方法主要评估核苷酸序列,但也可以检测拷贝数变异和许多串联重复扩展,极大地简化了运动障碍的诊断算法。评估 NGS 在诊断运动障碍中的功效的研究报告称,家族性疾病的诊断率高达 10.1%,早发性 PD 的诊断率高达 15.7%,肌张力障碍的诊断率为 11.7-37.5%,共济失调/痉挛性截瘫的诊断率为 12.1-61.8%,运动障碍的综合诊断率为 11.3-28%。患者选择和对检测到的变异和基因型的解释严格性影响诊断率。仔细比较患者或家族的疾病特征与先前报道的与同一变异或基因相关的表型,可以避免假阳性诊断,尽管有些基因与各种表型有关。从 TS 到 WES 和 WGS 的转变增加了正确诊断的患者数量,但对于许多患者来说,目前无法确定遗传原因。然而,新的遗传定义实体正在快速发现,遗传数据库和我们对基因型-表型相关性的了解也在稳步扩展。我们讨论了清晰沟通遗传结果的必要性,并建议在使用 NGS 测试报告神经遗传疾病时考虑的方面列表。