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全基因组荟萃分析确定与年龄相关性黄斑变性相关的新位点。

Genome-wide meta-analysis identifies novel loci associated with age-related macular degeneration.

机构信息

Statistical Genetics, QIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia.

School of Medicine, University of Queensland, Brisbane, QLD, Australia.

出版信息

J Hum Genet. 2020 Aug;65(8):657-665. doi: 10.1038/s10038-020-0750-x. Epub 2020 Apr 10.

Abstract

Age-related macular degeneration (AMD) is the leading cause of irreversible blindness among the elderly population. To accelerate the understanding of the genetics of AMD, we conducted a meta-analysis of genome-wide association studies (GWAS) combining data from the International AMD Genomics Consortium AMD-2016 GWAS (16,144 advanced AMD cases and 17,832 controls), AMD-2013 GWAS (17,181 cases and 60,074 controls), and new data on 4017 AMD cases and 14,984 controls from Genetic Epidemiology Research on Aging study. We identified 12 novel AMD loci near or within C4BPA-CD55, ZNF385B, ZBTB38, NFKB1, LINC00461, ADAM19, CPN1, ACSL5, CSK, RLBP1, CLUL1, and LBP. We then replicated the associations of the novel loci in independent cohorts, UK Biobank (5860 cases and 126,726 controls) and FinnGen (1266 cases and 47,560 control). In general, the concordance in effect sizes was very high (correlation in effect size estimates 0.89), 11 of 12 novel loci were in the expected direction, 5 were associated with AMD at a nominal significance level, and rs3825991 (near gene RLBP1) after Bonferroni correction. We identified an additional 21 novel genes using a gene-based test. Most of the novel genes are expressed in retinal tissue and could be involved in the pathogenesis of AMD (i.e., complement, inflammation, and lipid pathways). These findings enhance our understanding of the genetic architecture of AMD and shed light on the biological process underlying AMD pathogenesis.

摘要

年龄相关性黄斑变性(AMD)是老年人不可逆性失明的主要原因。为了加速对 AMD 遗传基础的理解,我们对国际 AMD 基因组联合会 AMD-2016 GWAS(16144 例晚期 AMD 病例和 17832 例对照)、AMD-2013 GWAS(17181 例病例和 60074 例对照)的数据和遗传流行病学研究衰老研究中的 4017 例 AMD 病例和 14984 例对照进行了全基因组关联研究(GWAS)的荟萃分析。我们在 C4BPA-CD55、ZNF385B、ZBTB38、NFKB1、LINC00461、ADAM19、CPN1、ACSL5、CSK、RLBP1、CLUL1 和 LBP 附近或之内鉴定出 12 个新的 AMD 位点。我们随后在独立队列中对新发现的位点进行了复制,这些队列包括英国生物库(5860 例病例和 126726 例对照)和芬兰基因(1266 例病例和 47560 例对照)。一般来说,效应大小的一致性非常高(效应大小估计值的相关性为 0.89),12 个新的位点中有 11 个在预期的方向上,5 个在名义显著水平上与 AMD 相关,经 Bonferroni 校正后 rs3825991(位于基因 RLBP1 附近)也相关。我们使用基于基因的检验发现了另外 21 个新基因。大多数新基因在视网膜组织中表达,可能参与 AMD 的发病机制(即补体、炎症和脂质途径)。这些发现提高了我们对 AMD 遗传结构的理解,并揭示了 AMD 发病机制背后的生物学过程。

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