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孤独症谱系障碍常见遗传风险变异的鉴定。

Identification of common genetic risk variants for autism spectrum disorder.

机构信息

The Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Aarhus, Denmark.

Centre for Integrative Sequencing, iSEQ, Aarhus University, Aarhus, Denmark.

出版信息

Nat Genet. 2019 Mar;51(3):431-444. doi: 10.1038/s41588-019-0344-8. Epub 2019 Feb 25.

DOI:10.1038/s41588-019-0344-8
PMID:30804558
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6454898/
Abstract

Autism spectrum disorder (ASD) is a highly heritable and heterogeneous group of neurodevelopmental phenotypes diagnosed in more than 1% of children. Common genetic variants contribute substantially to ASD susceptibility, but to date no individual variants have been robustly associated with ASD. With a marked sample-size increase from a unique Danish population resource, we report a genome-wide association meta-analysis of 18,381 individuals with ASD and 27,969 controls that identified five genome-wide-significant loci. Leveraging GWAS results from three phenotypes with significantly overlapping genetic architectures (schizophrenia, major depression, and educational attainment), we identified seven additional loci shared with other traits at equally strict significance levels. Dissecting the polygenic architecture, we found both quantitative and qualitative polygenic heterogeneity across ASD subtypes. These results highlight biological insights, particularly relating to neuronal function and corticogenesis, and establish that GWAS performed at scale will be much more productive in the near term in ASD.

摘要

自闭症谱系障碍(ASD)是一组高度遗传和异质性的神经发育表型,在超过 1%的儿童中被诊断出来。常见的遗传变异对 ASD 的易感性有很大贡献,但迄今为止,没有任何个体变异与 ASD 有明显的关联。利用来自独特的丹麦人群资源的显著样本量增加,我们对 18381 名 ASD 患者和 27969 名对照进行了全基因组关联荟萃分析,确定了五个全基因组显著位点。利用与具有显著重叠遗传结构的三种表型(精神分裂症、重度抑郁症和教育程度)的 GWAS 结果,我们在同样严格的显著性水平上发现了与其他特征共有的七个额外位点。剖析多基因结构,我们发现 ASD 亚型之间存在数量和质量上的多基因异质性。这些结果突出了生物学上的见解,特别是与神经元功能和皮质发生有关,并确立了在不久的将来,大规模进行的 GWAS 在 ASD 方面将更有成效。

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本文引用的文献

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Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.发现首个与注意缺陷多动障碍全基因组显著相关的风险位点。
Nat Genet. 2019 Jan;51(1):63-75. doi: 10.1038/s41588-018-0269-7. Epub 2018 Nov 26.
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Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.全基因组关联分析确定了 44 个风险变异,并完善了重度抑郁症的遗传结构。
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Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.常见的精神分裂症等位基因在突变不耐受基因和受强烈背景选择的区域中富集。
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The iPSYCH2012 case-cohort sample: new directions for unravelling genetic and environmental architectures of severe mental disorders.iPSYCH2012 病例-队列样本:深入研究严重精神障碍的遗传和环境结构的新方向。
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Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.对超过16000名自闭症谱系障碍患者进行全基因组关联研究的荟萃分析,发现了一个位于10q24.32的新基因座,且与精神分裂症存在显著重叠。
Mol Autism. 2017 May 22;8:21. doi: 10.1186/s13229-017-0137-9. eCollection 2017.
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Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.对78308人进行的全基因组关联荟萃分析确定了影响人类智力的新基因座和基因。
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Polygenic transmission disequilibrium confirms that common and rare variation act additively to create risk for autism spectrum disorders.多基因传递不平衡证实,常见变异和罕见变异以累加方式作用,增加患自闭症谱系障碍的风险。
Nat Genet. 2017 Jul;49(7):978-985. doi: 10.1038/ng.3863. Epub 2017 May 15.
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