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产 NDM 酶的 VIM、KPC 和 OXA-48 酶的基因相关性研究,这些酶是从 ICU 监测培养物中分离得到的。

Genetic Relatedness of NDM-Producing Co-Occurring VIM, KPC, and OXA-48 Enzymes from Surveillance Cultures from an Intensive Care Unit.

机构信息

Fundação Oswaldo Cruz, Instituto Nacional de Controle de Qualidade em Saúde, Rio de Janeiro, Brazil.

出版信息

Microb Drug Resist. 2020 Oct;26(10):1219-1226. doi: 10.1089/mdr.2019.0483. Epub 2020 Apr 13.

Abstract

is an opportunistic bacterial pathogen most commonly associated with nosocomial infections, especially in intensive care unit (ICU) patients. Routine surveillance cultures for carbapenemase-producing Enterobacteriaceae have become a common practice for hospital infection prevention. The objective of this study was to investigate the genetic relatedness of carbapenem-resistant carrying gene across multilocus sequence typing (MLST) scheme. Surveillance rectal swabs from 4,463 ICU patients admitted to the Rio de Janeiro hospital (March 2016-2017) were screened on CHROMagar mSuperCARBA. Of these, 631 isolates were subjected to VITEK 2 system for phenotypic microbial identification and antibiotic susceptibility testing. Out of 631 isolates, 108 were identified as , 103 of which were confirmed by PCR of 16S-23S rDNA internal transcribed spacer (ITS). Eleven -positive isolates were subsequently screened for , , , , , , and -1-8 genes. Twenty-seven percent (3/11) revealed co-occurrence with KPC, OXA-48, and VIM, 46% (5/11) with KPC and VIM, and 18% (2/11) with VIM type. No strains harbored the , , , and -1 to 8 resistance genes. All 11 isolates were resistant to β-lactams, ciprofloxacin 90%, tigecycline 82%, gentamicin 73%, and amikacin 18%, and were classified as multidrug resistant (MDR), extensively drug resistant (XDR), and pandrug resistant (PDR). Molecular epidemiology data based on MLST revealed 11 different STs, 8 of which were novel and 3 were previously described. Six out of the eight new STs were associated with MDR and PDR strains and two clonal complexes were reported, including CC258 and CC15. The coexistence of NDM-producing and other carbapenemase has been frequently described worldwide. Moreover, we report for the first time co-harboring up to four carbapenemases from active surveillance cultures.

摘要

是一种机会性细菌病原体,最常与医院获得性感染有关,特别是在重症监护病房(ICU)患者中。对产碳青霉烯酶肠杆菌科进行常规监测培养已成为医院感染预防的常见做法。本研究的目的是调查携带 基因的耐碳青霉烯肠杆菌科的基因相关性,采用多位点序列分型(MLST)方案。对 2016 年 3 月至 2017 年期间里约热内卢医院收治的 4463 名 ICU 患者的直肠拭子进行了 CHROMagar mSuperCARBA 筛查。其中 631 株分离物采用 VITEK 2 系统进行表型微生物鉴定和抗生素药敏试验。631 株分离物中,108 株鉴定为 ,其中 103 株经 16S-23S rDNA 内转录间隔区(ITS)PCR 证实。随后对 11 株 阳性分离物进行了 、 、 、 、 、 和 -1-8 基因的筛选。27%(3/11)显示与 KPC、OXA-48 和 VIM 同时存在,46%(5/11)与 KPC 和 VIM 同时存在,18%(2/11)与 VIM 型同时存在。没有菌株携带 、 、 和 -1 至 8 耐药基因。所有 11 株分离物均对β-内酰胺类、环丙沙星 90%、替加环素 82%、庆大霉素 73%和阿米卡星 18%耐药,被归类为多药耐药(MDR)、广泛耐药(XDR)和泛耐药(PDR)。基于 MLST 的分子流行病学数据显示 11 种不同的 ST,其中 8 种为新 ST,3 种为先前描述的 ST。8 种新 ST 中有 6 种与 MDR 和 PDR 菌株有关,报告了 2 个克隆复合体,包括 CC258 和 CC15。产 NDM 的 与其他碳青霉烯酶的共存已在世界范围内频繁报道。此外,我们首次报告了主动监测培养物中同时携带多达 4 种碳青霉烯酶的情况。

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