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四种共振结构阐明了生物生色团的双键异构化。

Four resonance structures elucidate double-bond isomerisation of a biological chromophore.

机构信息

Max-Planck Institute for Medical Research, Jahnstraße 29, 69120 Heidelberg, Germany.

出版信息

Phys Chem Chem Phys. 2020 Apr 29;22(16):8535-8544. doi: 10.1039/d0cp00814a.

DOI:10.1039/d0cp00814a
PMID:32301950
Abstract

Photoinduced double-bond isomerisation of the chromophore of photoactive yellow protein (PYP) is highly sensitive to chromophore-protein interactions. On the basis of high-level ab initio calculations, we scrutinise the effect of hydrogen bonds on the photophysical and photochemical properties of the chromophore. We identify four resonance structures - two closed-shell and two biradicaloid - that elucidate the electronic structure of the ground and first excited states involved in the isomerisation process. Changing the relative energies of the resonance structures by hydrogen-bonding interactions tunes all photochemical properties of the chromophore in an interdependent manner. Our study sheds new light on the role of the chromophore electronic structure in tuning in photosensors and fluorescent proteins.

摘要

光致变色双键异构化光激活黄色蛋白(PYP)的生色团对生色团-蛋白质相互作用非常敏感。基于高级从头算计算,我们仔细研究了氢键对生色团光物理和光化学性质的影响。我们确定了四个共振结构 - 两个闭壳层和两个双自由基 - 阐明了参与异构化过程的基态和第一激发态的电子结构。通过氢键相互作用改变共振结构的相对能量以相互依赖的方式调谐生色团的所有光化学性质。我们的研究揭示了生色团电子结构在调节光传感器和荧光蛋白中的作用。

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Four resonance structures elucidate double-bond isomerisation of a biological chromophore.四种共振结构阐明了生物生色团的双键异构化。
Phys Chem Chem Phys. 2020 Apr 29;22(16):8535-8544. doi: 10.1039/d0cp00814a.
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Molecular dynamics simulations of photoactive yellow protein (PYP) in three states of its photocycle: a comparison with X-ray and NMR data and analysis of the effects of Glu46 deprotonation and mutation.光活性黄色蛋白(PYP)光循环三种状态的分子动力学模拟:与X射线和核磁共振数据的比较以及对Glu46去质子化和突变影响的分析。
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Hydrogen-Bonding Interaction Regulates Photoisomerization of a Single-Bond-Rotation Locked Photoactive Yellow Protein Chromophore in Protein.氢键相互作用调控蛋白质中单键旋转锁定的光活性黄色蛋白发色团的光异构化。
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Photoinduced isomerization of the photoactive yellow protein (PYP) chromophore: interplay of two torsions, a HOOP mode and hydrogen bonding.光致变色蛋白(PYP)发色团的光诱导异构化:两种扭转、HOOP 模式和氢键相互作用的相互作用。
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Anticipatory active-site motions and chromophore distortion prime photoreceptor PYP for light activation.预期的活性位点运动和发色团畸变使光感受器PYP为光激活做好准备。
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Hydrogen bonding controls excited-state decay of the photoactive yellow protein chromophore.氢键控制光活性黄色蛋白发色团的激发态衰变。
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Photoactivation of the photoactive yellow protein: why photon absorption triggers a trans-to-cis Isomerization of the chromophore in the protein.光活性黄色蛋白的光激活:为何光子吸收会引发蛋白质中发色团从反式到顺式的异构化。
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Confinement in crystal lattice alters entire photocycle pathway of the Photoactive Yellow Protein.晶体晶格中的限制会改变光致变色黄色蛋白的整个光循环途径。
Nat Commun. 2020 Aug 25;11(1):4248. doi: 10.1038/s41467-020-18065-9.
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Mechanism of Color and Photoacidity Tuning for the Protonated Green Fluorescent Protein Chromophore.质子化绿色荧光蛋白发色团的颜色和光酸可调谐机制。
J Am Chem Soc. 2020 Jun 24;142(25):11032-11041. doi: 10.1021/jacs.0c02796. Epub 2020 Jun 9.