School of Biological Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran.
Department of Biotechnology, Faculty of Applied Sciences, Delft University of Technology, Delft, The Netherlands.
PLoS One. 2020 Apr 24;15(4):e0232060. doi: 10.1371/journal.pone.0232060. eCollection 2020.
The emergence of phenotypic diversity in a population of cells and their arrangement in space and time is one of the most fascinating features of living systems. In fact, understanding multicellularity is unthinkable without explaining the proximate and the ultimate causes of cell differentiation in time and space. Simpler forms of cell differentiation can be found in unicellular organisms, such as bacterial biofilm, where reversible cell differentiation results in phenotypically diverse populations. In this manuscript, we attempt to start with the simple case of reversible nongenetic phenotypic to construct a model of differentiation and pattern formation. Our model, which we refer to as noise-driven differentiation (NDD) model, is an attempt to consider the prevalence of noise in biological systems, alongside what is known about genetic switches and signaling, to create a simple model which generates spatiotemporal patterns from bottom-up. Our simulations indicate that the presence of noise in cells can lead to reversible differentiation and the addition of signaling can create spatiotemporal pattern.
细胞群体中表型多样性的出现及其在时空上的排列是生命系统最迷人的特征之一。事实上,如果不能解释细胞在时间和空间上分化的近因和远因,就无法理解多细胞性。在单细胞生物中可以找到更简单的细胞分化形式,例如细菌生物膜,其中可逆的细胞分化导致表型多样化的群体。在本文中,我们试图从简单的可逆非遗传表型开始,构建一个分化和模式形成的模型。我们的模型,我们称之为噪声驱动分化(NDD)模型,是试图考虑生物系统中噪声的普遍性,以及已知的遗传开关和信号转导,以创建一个简单的模型,从下到上产生时空模式。我们的模拟表明,细胞中的噪声会导致可逆分化,而信号的添加可以产生时空模式。