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病毒分类学的新范畴:将病毒圈划分为 15 个层次等级。

The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks.

出版信息

Nat Microbiol. 2020 May;5(5):668-674. doi: 10.1038/s41564-020-0709-x. Epub 2020 Apr 27.


DOI:10.1038/s41564-020-0709-x
PMID:32341570
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7186216/
Abstract

Virus taxonomy emerged as a discipline in the middle of the twentieth century. Traditionally, classification by virus taxonomists has been focussed on the grouping of relatively closely related viruses. However, during the past few years, the International Committee on Taxonomy of Viruses (ICTV) has recognized that the taxonomy it develops can be usefully extended to include the basal evolutionary relationships among distantly related viruses. Consequently, the ICTV has changed its Code to allow a 15-rank classification hierarchy that closely aligns with the Linnaean taxonomic system and may accommodate the entire spectrum of genetic divergence in the virosphere. The current taxonomies of three human pathogens, Ebola virus, severe acute respiratory syndrome coronavirus and herpes simplex virus 1 are used to illustrate the impact of the expanded rank structure. This new rank hierarchy of virus taxonomy will stimulate further research on virus origins and evolution, and vice versa, and could promote crosstalk with the taxonomies of cellular organisms.

摘要

病毒分类学是在 20 世纪中期发展起来的一门学科。传统上,病毒分类学家的分类工作主要集中在相对密切相关的病毒的分组上。然而,在过去的几年中,国际病毒分类委员会(ICTV)已经认识到,它所制定的分类法可以有效地扩展到包括远距离相关病毒之间的基本进化关系。因此,ICTV 已经修改了其分类法,允许使用一个与林奈分类系统紧密一致的 15 级分类层次结构,并且可能容纳病毒界中所有遗传分歧的范围。目前使用三种人类病原体(埃博拉病毒、严重急性呼吸综合征冠状病毒和单纯疱疹病毒 1)的分类来举例说明扩展等级结构的影响。这种新的病毒分类等级层次结构将刺激对病毒起源和进化的进一步研究,反之亦然,并且可以促进与细胞生物分类法的交流。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a81e/7186216/06a50720b01f/41564_2020_709_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a81e/7186216/d5997c7fe205/41564_2020_709_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a81e/7186216/06a50720b01f/41564_2020_709_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a81e/7186216/d5997c7fe205/41564_2020_709_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a81e/7186216/06a50720b01f/41564_2020_709_Fig2_HTML.jpg

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[1]
The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks.

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本文引用的文献

[1]
Global Organization and Proposed Megataxonomy of the Virus World.

Microbiol Mol Biol Rev. 2020-5-20

[2]
Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids.

Nat Commun. 2019-7-31

[3]
Portal Protein: The Orchestrator of Capsid Assembly for the dsDNA Tailed Bacteriophages and Herpesviruses.

Annu Rev Virol. 2019-7-23

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Evolution and ecology of plant viruses.

Nat Rev Microbiol. 2019-7-16

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Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019).

Arch Virol. 2019-9

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Nat Rev Microbiol. 2019-7

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Syst Biol. 2020-1-1

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Annu Rev Virol. 2019-5-17

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Cell. 2019-4-25

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Classify viruses - the gain is worth the pain.

Nature. 2019-2

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