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卡诺氏菌属内种间竞争网络的嵌套结构。

Nested structure of intraspecific competition network in Carnobacterium maltaromaticum.

机构信息

Université de Lorraine, LIBio, F-54000, Nancy, France.

Laboratoire de Biotechnologies Appliquées, EDST, Université Libanaise, Tripoli, Lebanon.

出版信息

Sci Rep. 2020 Apr 30;10(1):7335. doi: 10.1038/s41598-020-63844-5.

Abstract

While competition targeting food-borne pathogens is being widely documented, few studies have focused on competition among non-pathogenic food bacteria. Carnobacterium maltaromaticum is a genetically diverse lactic acid bacterium known for comprising several bacteriocinogenic strains with bioprotective potentialities against the food-borne pathogen Listeria monocytogenes. The aim of our study is to examine the network properties of competition among a collection of 73 strains of C. maltaromaticum and to characterize their individual interaction potential. The performed high-throughput competition assays, investigating 5 329 pairwise interactions, showed that intraspecific competition was major in C. maltaromaticum with approximately 56% of the sender strains antagonizing at least one receiver strain. A high diversity of inhibitory and sensitivity spectra was identified along with a majority of narrow inhibitory as well as sensitivity spectra. Through network analysis approach, we determined the highly nested architecture of C. maltaromaticum competition network, thus showing that competition in this species is determined by both the spectrum width of the inhibitory activity of sender strains and the spectrum width of the sensitivity of receiver strains. This study provides knowledge of the competition network in C. maltaromaticum that could be used in rational assembly of compatible microbial strains for the design of mixed starter cultures.

摘要

虽然针对食源性病原体的竞争已被广泛记录,但很少有研究关注非致病性食源细菌之间的竞争。麦芽糖明串珠菌是一种遗传多样性的乳酸菌,其包含几种具有生物保护潜力的细菌素产生菌株,可以对抗食源性病原体单核细胞增生李斯特菌。我们的研究旨在研究 73 株麦芽糖明串珠菌之间竞争的网络特性,并表征它们的个体相互作用潜力。进行的高通量竞争测定,研究了 5329 对两两相互作用,表明种内竞争是麦芽糖明串珠菌中的主要竞争方式,大约 56%的发送菌株至少拮抗一个接收菌株。确定了高度多样化的抑制和敏感性谱,以及大多数狭窄的抑制和敏感性谱。通过网络分析方法,我们确定了麦芽糖明串珠菌竞争网络的高度嵌套结构,从而表明该物种的竞争既取决于发送菌株抑制活性的光谱宽度,也取决于接收菌株敏感性的光谱宽度。这项研究提供了麦芽糖明串珠菌竞争网络的知识,可用于合理组合相容的微生物菌株,以设计混合启动培养物。

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