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鉴定和建模 α- 连接蛋白聚糖糖基化酶 LARGE1 中的 GT-A 折叠。

Identification and Modeling of a GT-A Fold in the α-Dystroglycan Glycosylating Enzyme LARGE1.

机构信息

Dipartimento di Scienze Biotecnologiche di Base, Cliniche Intensivologiche e Perioperatorie, Università Cattolica del Sacro Cuore, L.go F. Vito 1, 00168 Rome, Italy.

Institute of Chemical Sciences and Technologies "Giulio Natta" (SCITEC)-CNR, L.go F. Vito 1, 00168 Rome, Italy.

出版信息

J Chem Inf Model. 2020 Jun 22;60(6):3145-3156. doi: 10.1021/acs.jcim.0c00281. Epub 2020 May 14.

Abstract

The acetylglucosaminyltransferase-like protein LARGE1 is an enzyme that is responsible for the final steps of the post-translational modifications of dystroglycan (DG), a membrane receptor that links the cytoskeleton with the extracellular matrix in the skeletal muscle and in a variety of other tissues. LARGE1 acts by adding the repeating disaccharide unit [-3Xyl-α1,3GlcAβ1-] to the extracellular portion of the DG complex (α-DG); defects in the gene result in an aberrant glycosylation of α-DG and consequent impairment of its binding to laminin, eventually affecting the connection between the cell and the extracellular environment. In the skeletal muscle, this leads to degeneration of the muscular tissue and muscular dystrophy. So far, a few missense mutations have been identified within the LARGE1 protein and linked to congenital muscular dystrophy, and because no structural information is available on this enzyme, our understanding of the molecular mechanisms underlying these pathologies is still very limited. Here, we generated a 3D model structure of the two catalytic domains of LARGE1, combining different molecular modeling approaches. Furthermore, by using molecular dynamics simulations, we analyzed the effect on the structure and stability of the first catalytic domain of the pathological missense mutation S331F that gives rise to a severe form of muscle-eye-brain disease.

摘要

乙酰氨基葡萄糖基转移酶样蛋白 LARGE1 是一种酶,负责连接细胞骨架与细胞外基质的膜受体——抗肌萎缩蛋白聚糖(DG)的翻译后修饰的最后步骤。LARGE1 通过向 DG 复合物的细胞外部分添加重复的二糖单元[-3Xyl-α1,3GlcAβ1-](α-DG)来发挥作用;该基因的缺陷导致 α-DG 的异常糖基化,从而影响其与层粘连蛋白的结合,最终影响细胞与细胞外环境之间的连接。在骨骼肌中,这会导致肌肉组织退化和肌肉营养不良。到目前为止,已经在 LARGE1 蛋白中鉴定出少数错义突变与先天性肌肉营养不良有关,由于该酶没有结构信息,我们对这些病理的分子机制的理解仍然非常有限。在这里,我们结合不同的分子建模方法生成了 LARGE1 的两个催化结构域的 3D 模型结构。此外,通过使用分子动力学模拟,我们分析了导致严重肌肉眼脑疾病的 S331F 病理错义突变对第一个催化结构域的结构和稳定性的影响。

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