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晶体学建模。

Crystallographic modelling.

作者信息

Driessen R A, Loopstra B O, de Bruijn D P, Kuipers H P, Schenk H

机构信息

Laboratorium voor Kristallografie, Universiteit van Amsterdam, The Netherlands.

出版信息

J Comput Aided Mol Des. 1988 Oct;2(3):225-33. doi: 10.1007/BF01531996.

Abstract

The project on crystallographic modelling aims at extending the application of interactive graphics to inorganic structures. Starting from the available expertise in organic and protein modelling, the symmetry of the crystal structure is used not only to draw fixed models of many unit cells of the structure, which as an entity can be interactively manipulated, but also to change details of the structures interactively with retention of the original symmetry. Real-time shifts of atom positions are automatically applied to all symmetry-equivalent atoms given the symmetry constraints. This also applies to translations and rotations of groups of atoms. In order to get feedback about these structural changes one can simulate powder diffraction patterns in real-time mode and compare them with the experimental powder patterns. These features are crucial in truly crystallographic modelling, but have not been implemented before in other programs. The program can be used in combination with standard molecular modelling programs and is also interfaced to the Inorganic Crystal Structure Database. Before describing the realization of these features on state-of-the-art hardware, we will review the expertise in molecular modelling and discuss an MS-DOS program to study inorganic crystal structures.

摘要

晶体学建模项目旨在将交互式图形的应用扩展到无机结构。从有机和蛋白质建模的现有专业知识出发,晶体结构的对称性不仅用于绘制该结构许多晶胞的固定模型(作为一个整体可以进行交互式操作),还用于在保持原始对称性的情况下交互式地更改结构细节。在给定对称性约束的情况下,原子位置的实时移动会自动应用于所有对称等效原子。这也适用于原子组的平移和旋转。为了获得有关这些结构变化的反馈,可以在实时模式下模拟粉末衍射图谱,并将其与实验粉末图谱进行比较。这些功能在真正的晶体学建模中至关重要,但以前在其他程序中尚未实现。该程序可以与标准分子建模程序结合使用,并且还与无机晶体结构数据库接口。在描述这些功能在最先进硬件上的实现之前,我们将回顾分子建模方面的专业知识,并讨论一个用于研究无机晶体结构的MS-DOS程序。

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