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DNA编码文库综述:药物发现的通用工具。

An overview of DNA-encoded libraries: A versatile tool for drug discovery.

作者信息

Madsen Daniel, Azevedo Carlos, Micco Iolanda, Petersen Lars Kolster, Hansen Nils Jakob Vest

机构信息

Vipergen ApS, Copenhagen, Denmark.

Vipergen ApS, Copenhagen, Denmark.

出版信息

Prog Med Chem. 2020;59:181-249. doi: 10.1016/bs.pmch.2020.03.001. Epub 2020 Apr 22.

Abstract

DNA-encoded libraries (DELs) are collections of small molecules covalently attached to amplifiable DNA tags carrying unique information about the structure of each library member. A combinatorial approach is used to construct the libraries with iterative DNA encoding steps, facilitating tracking of the synthetic history of the attached compounds by DNA sequencing. Various screening protocols have been developed which allow protein target binders to be selected out of pools containing up to billions of different small molecules. The versatile methodology has allowed identification of numerous biologically active compounds and is now increasingly being adopted as a tool for lead discovery campaigns and identification of chemical probes. A great focus in recent years has been on developing DNA compatible chemistries that expand the structural diversity of the small molecule library members in DELs. This chapter provides an overview of the challenges and accomplishments in DEL technology, reviewing the technological aspects of producing and screening DELs with a perspective on opportunities, limitations, and future directions.

摘要

DNA编码文库(DELs)是小分子的集合,这些小分子与可扩增的DNA标签共价连接,标签携带有关每个文库成员结构的独特信息。采用组合方法通过迭代DNA编码步骤构建文库,便于通过DNA测序追踪所连接化合物的合成历史。已经开发了各种筛选方案,这些方案允许从包含多达数十亿种不同小分子的库中筛选出蛋白质靶标结合物。这种通用方法已使众多生物活性化合物得以鉴定,并且现在越来越多地被用作先导化合物发现活动和化学探针鉴定的工具。近年来,人们高度关注开发与DNA兼容的化学方法,以扩大DELs中小分子文库成员的结构多样性。本章概述了DEL技术中的挑战和成就,从机会、局限性和未来方向的角度回顾了生产和筛选DELs的技术方面。

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