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两人同心,其利断金:抗体混合物作用机制的建模。

When two are better than one: Modeling the mechanisms of antibody mixtures.

机构信息

Basic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.

Howard Hughes Medical Institute, Seattle, Washington, United States of America.

出版信息

PLoS Comput Biol. 2020 May 4;16(5):e1007830. doi: 10.1371/journal.pcbi.1007830. eCollection 2020 May.

Abstract

It is difficult to predict how antibodies will behave when mixed together, even after each has been independently characterized. Here, we present a statistical mechanical model for the activity of antibody mixtures that accounts for whether pairs of antibodies bind to distinct or overlapping epitopes. This model requires measuring n individual antibodies and their [Formula: see text] pairwise interactions to predict the 2n potential combinations. We apply this model to epidermal growth factor receptor (EGFR) antibodies and find that the activity of antibody mixtures can be predicted without positing synergy at the molecular level. In addition, we demonstrate how the model can be used in reverse, where straightforward experiments measuring the activity of antibody mixtures can be used to infer the molecular interactions between antibodies. Lastly, we generalize this model to analyze engineered multidomain antibodies, where components of different antibodies are tethered together to form novel amalgams, and characterize how well it predicts recently designed influenza antibodies.

摘要

即使每种抗体都已经被独立地进行了表征,预测抗体混合后的行为也很困难。在这里,我们提出了一种用于抗体混合物活性的统计力学模型,该模型考虑了抗体对是否与不同或重叠的表位结合。该模型需要测量 n 个单独的抗体及其[Formula: see text]对相互作用,以预测 2n 种潜在的组合。我们将该模型应用于表皮生长因子受体(EGFR)抗体,并发现无需在分子水平上假设协同作用,即可预测抗体混合物的活性。此外,我们展示了如何在反向应用该模型,其中通过测量抗体混合物活性的简单实验可以用来推断抗体之间的分子相互作用。最后,我们将该模型推广到分析工程化的多结构域抗体,其中不同抗体的组成部分被连接在一起形成新的混合物,并评估其预测最近设计的流感抗体的效果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c72/7224563/c006d470e5b8/pcbi.1007830.g001.jpg

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