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年轻人肚脐微生物组的多样性。

Diversity of navel microbiome in young adults.

机构信息

College of the Sciences and Mathematics, West Chester University, West Chester, PA, USA.

Department of Biology, West Chester University, West Chester, PA, USA.

出版信息

J Med Microbiol. 2020 May;69(5):721-727. doi: 10.1099/jmm.0.001192. Epub 2020 May 5.

DOI:10.1099/jmm.0.001192
PMID:32369006
Abstract

Human skin microbial communities represent a tremendous source of genetic diversity that evolves as a function of human age. Microbiota differs between regions of oily and moist skin, and appears to stabilize with age. We have a minimal understanding of the time frame required for the stabilization of skin microbiota, and the role played by gender. In the current study, we examined the microbiota present in the navel region of college-attending young adults in the age group of 18-25 years and investigated if diversity is associated with gender (male and female). The study involved 16 female and six male subjects. Isolated DNA samples from navel swabs were processed using the Nextera XT library preparation kit and sequenced using the MiSeq platform. Data were analysed using QIIME and statistical analysis performed in R. Microbiota of navel skin is dominated by and and includes opportunistic pathogens like and . Also present as the major component of the flora were the organisms normally associated with the gastrointestinal tract such as , , and organisms from the and families. Comparison of alpha and beta diversity of the microbiota in the male and female navel regions suggests that the flora is not statistically different (>0.05). However, pairwise comparison suggests that the abundance of 12 specific genera varied with gender, including higher abundance of and in females. Our findings indicate that the navel skin microbiota of young adults has a core microbiota of and . We also noted the presence of a significant number of opportunistic pathogens. A minor gender difference in the abundance of individual organisms was also observed.

摘要

人类皮肤微生物群落是遗传多样性的巨大来源,其进化是人类年龄的函数。微生物群落存在于油性和湿润皮肤的不同区域,并且似乎随着年龄的增长而趋于稳定。我们对皮肤微生物群落稳定所需的时间框架以及性别的作用知之甚少。在目前的研究中,我们研究了 18-25 岁的大学生肚脐区域的微生物群,并调查了多样性是否与性别(男性和女性)有关。研究涉及 16 名女性和 6 名男性。从肚脐拭子中提取的分离 DNA 样本采用 Nextera XT 文库制备试剂盒进行处理,并使用 MiSeq 平台进行测序。使用 QIIME 进行数据分析,并在 R 中进行统计分析。肚脐皮肤的微生物群主要由 和 组成,包括机会性病原体,如 和 。肠道相关的正常生物体,如 、 、 和 以及 科和 科的生物体,也是菌群的主要组成部分。男性和女性肚脐区域的微生物群的 alpha 和 beta 多样性比较表明,菌群在统计学上没有差异(>0.05)。然而,两两比较表明,12 种特定属的丰度存在性别差异,包括女性中 、 和 的丰度较高。我们的研究结果表明,年轻人的肚脐皮肤微生物群具有核心微生物群,由 和 组成。我们还注意到存在大量机会性病原体。还观察到个体生物丰度存在轻微的性别差异。

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