Zhang Ying, Liu Yuqing, Liu Hanjie, Zhao Zheng, Wu Fan, Zeng Fan
Department of Molecular Neuropathology, Beijing Neurosurgical Institute, Capital Medical University, Beijing, China.
Chinese Glioma Genome Atlas Network (CGGA) and Asian Glioma Genome Atlas Network (AGGA), Beijing, China.
Front Oncol. 2020 Apr 20;10:508. doi: 10.3389/fonc.2020.00508. eCollection 2020.
Methylation of DNA, RNA or protein is a reversible modification. The proteins and genes that regulate this modification can be a candidate target for tumor therapy. However, the characteristics of methyltransferase related genes in glioma remain obscure. In this study, we systematically analyzed the relationship between methyltransferase-related genes expression profiles and outcomes in glioma patients based on The Cancer Genome Atlas and Chinese Glioma Genome Atlas RNA sequencing datasets. Consensus clustering identified two robust groups with significantly different pathological features and prognosis. Then a methyltransferase-related risk signature was built by a Cox proportional hazards model with elastic net penalty. Moreover, the risk score is associated with patients' clinical and molecular features and can be used as an independent prognostic indicator for patients with glioma. Furthermore, genes associated with the high-risk group were involved in various aspects of the malignant progression of glioma via Gene Ontology analysis and Gene Set Enrichment Analysis. In summary, our study identified a methyltransferase-related risk signature for predicting the prognosis of gliomas.
DNA、RNA或蛋白质的甲基化是一种可逆修饰。调节这种修饰的蛋白质和基因可能是肿瘤治疗的候选靶点。然而,胶质瘤中甲基转移酶相关基因的特征仍不清楚。在本研究中,我们基于癌症基因组图谱(The Cancer Genome Atlas)和中国胶质瘤基因组图谱(Chinese Glioma Genome Atlas)RNA测序数据集,系统分析了甲基转移酶相关基因表达谱与胶质瘤患者预后之间的关系。一致性聚类确定了两个具有显著不同病理特征和预后的稳健组。然后通过具有弹性网络惩罚的Cox比例风险模型构建了甲基转移酶相关风险特征。此外,风险评分与患者的临床和分子特征相关,可作为胶质瘤患者的独立预后指标。此外,通过基因本体分析(Gene Ontology analysis)和基因集富集分析(Gene Set Enrichment Analysis),发现与高危组相关的基因参与了胶质瘤恶性进展的各个方面。总之,我们的研究确定了一种用于预测胶质瘤预后的甲基转移酶相关风险特征。