Suppr超能文献

具有相似发展历史的挪威白绵羊和新西兰复合绵羊群体之间的遗传关联性

Genetic Connectedness Between Norwegian White Sheep and New Zealand Composite Sheep Populations With Similar Development History.

作者信息

Oliveira Hinayah Rojas, McEwan John Colin, Jakobsen Jette, Blichfeldt Thor, Meuwissen Theodorus, Pickering Natalie, Clarke Shannon Marie, Brito Luiz F

机构信息

Department of Animal Sciences, Purdue University, West Lafayette, IN, United States.

Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON, Canada.

出版信息

Front Genet. 2020 Apr 24;11:371. doi: 10.3389/fgene.2020.00371. eCollection 2020.

Abstract

The Norwegian White sheep (NWS) and New Zealand Terminal Sire Composite (NZC) sheep breeds have been developed based on crossing of multiple breeds, mainly of Northern European origin. A close genetic relationship between these populations could enable across-country genomic evaluations. The main objectives of this study were to assess the genetic connectedness between Norwegian and New Zealand sheep populations and estimate numerous genetic diversity metrics for these two populations. A total of 792 NWS and 16,912 NZC animals were genotyped using a high-density Illumina SNP chip panel (∼606K SNPs). The NZC animals were grouped based on their breed composition as: Finn, Lamb Supreme, Primera, Texel, "Other Dual Purpose", and "Other Terminal Sire". The average level of linkage disequilibrium ranged from 0.156 (for Primera) to 0.231 (for Finn). The lowest consistency of gametic phase was estimated between NWS and Finn (0.397), and between NWS and Texel (0.443), respectively. Similar consistency of gametic phase was estimated between NWS and the other NZC populations (∼ 0.52). For all composite sheep populations analyzed in this study, the majority of runs of homozygosity (ROH) segments identified had short length (<2,500 kb), indicating ancient (instead of recent) inbreeding. The variation in the number of ROH segments observed in the NWS was similar to the variation observed in Primera and Lamb Supreme. There was no clear discrimination between NWS and NZC based on the first few principal components. In addition, based on admixture analyses, there seems to be a significant overlap of the ancestral populations that contributed to the development of both NWS and NZC. There were no evident signatures of selection in these populations, which might be due to recent crossbreeding. In conclusion, the NWS composite breed was shown to be moderately related to NZC populations, especially Primera and Lamb Supreme. The findings reported here indicate a promising opportunity for collaborative genomic analyses involving NWS and NZC sheep populations.

摘要

挪威白绵羊(NWS)和新西兰终端父本复合品种(NZC)绵羊是通过多个品种杂交培育而成的,这些品种主要起源于北欧。这些群体之间密切的遗传关系能够实现跨国基因组评估。本研究的主要目的是评估挪威和新西兰绵羊群体之间的遗传关联性,并估计这两个群体的众多遗传多样性指标。使用高密度Illumina SNP芯片组(约606K个单核苷酸多态性)对总共792只NWS和16912只NZC动物进行了基因分型。NZC动物根据其品种组成分为:芬兰羊、特级羔羊、 Primera、特克塞尔羊、“其他兼用型”和“其他终端父本型”。连锁不平衡的平均水平范围从0.156(Primera)到0.231(芬兰羊)。配子相位一致性最低的估计值分别出现在NWS与芬兰羊之间(0.397)以及NWS与特克塞尔羊之间(0.443)。NWS与其他NZC群体之间的配子相位一致性估计值相似(约为0.52)。对于本研究中分析的所有复合绵羊群体,鉴定出的大多数纯合子片段(ROH)长度较短(<2500 kb),表明是古老的(而非近期的)近亲繁殖。在NWS中观察到的ROH片段数量变化与在Primera和特级羔羊中观察到的变化相似。根据最初的几个主成分,NWS和NZC之间没有明显的区分。此外,基于混合分析,似乎对NWS和NZC的发展有贡献的祖先群体存在显著重叠。这些群体中没有明显的选择特征,这可能是由于近期的杂交所致。总之,NWS复合品种与NZC群体,特别是Primera和特级羔羊,显示出中等程度的相关性。此处报告的研究结果表明,涉及NWS和NZC绵羊群体的合作基因组分析具有广阔前景。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5ab/7194024/5c7f8c875ad2/fgene-11-00371-g001.jpg

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验