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M6A2Target:m6A 写入酶、擦除酶和读取酶靶标的综合数据库。

M6A2Target: a comprehensive database for targets of m6A writers, erasers and readers.

出版信息

Brief Bioinform. 2021 May 20;22(3). doi: 10.1093/bib/bbaa055.

Abstract

N6-methyladenosine (m6A) is the most abundant posttranscriptional modification in mammalian mRNA molecules and has a crucial function in the regulation of many fundamental biological processes. The m6A modification is a dynamic and reversible process regulated by a series of writers, erasers and readers (WERs). Different WERs might have different functions, and even the same WER might function differently in different conditions, which are mostly due to different downstream genes being targeted by the WERs. Therefore, identification of the targets of WERs is particularly important for elucidating this dynamic modification. However, there is still no public repository to host the known targets of WERs. Therefore, we developed the m6A WER target gene database (m6A2Target) to provide a comprehensive resource of the targets of m6A WERs. M6A2Target provides a user-friendly interface to present WER targets in two different modules: 'Validated Targets', referred to as WER targets identified from low-throughput studies, and 'Potential Targets', including WER targets analyzed from high-throughput studies. Compared to other existing m6A-associated databases, m6A2Target is the first specific resource for m6A WER target genes. M6A2Target is freely accessible at http://m6a2target.canceromics.org.

摘要

N6-甲基腺苷(m6A)是哺乳动物 mRNA 分子中最丰富的转录后修饰,在许多基本生物过程的调控中具有关键作用。m6A 修饰是一个由一系列写入器、擦除器和读取器(WERs)调节的动态和可逆过程。不同的 WERs 可能具有不同的功能,甚至相同的 WER 在不同的条件下也可能具有不同的功能,这主要是由于 WERs 靶向的下游基因不同。因此,鉴定 WERs 的靶标对于阐明这种动态修饰尤为重要。然而,目前仍然没有公共存储库来容纳 WERs 的已知靶标。因此,我们开发了 m6A WER 靶基因数据库(m6A2Target),为 m6A WER 的靶标提供了一个全面的资源。m6A2Target 提供了一个用户友好的界面,在两个不同的模块中呈现 WER 靶标:“已验证的靶标”,指的是从低通量研究中鉴定的 WER 靶标,以及“潜在靶标”,包括从高通量研究中分析的 WER 靶标。与其他现有的 m6A 相关数据库相比,m6A2Target 是第一个专门针对 m6A WER 靶基因的资源。m6A2Target 可在 http://m6a2target.canceromics.org 免费获取。

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