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原位杂交优化与验证指南

Guidelines for the Optimization and Validation of In Situ Hybridization.

机构信息

Cancer Research UK, University of Cambridge, Cambridge, UK.

Abcam plc, Discovery Drive, Cambridge Biomedical Campus, Cambridge, UK.

出版信息

Methods Mol Biol. 2020;2148:3-17. doi: 10.1007/978-1-0716-0623-0_1.

DOI:10.1007/978-1-0716-0623-0_1
PMID:32394372
Abstract

As RNA in situ hybridization (ISH) moves into the mainstream lab and increasingly into clinical adoption and additional multiplexing techniques are developed to enable further RNA ISH identification, a set of guidelines on the validation of ISH is required. These guidelines include choice of methods, appropriate controls, and protocol optimization as well as a central core message of understanding the target, understanding the ISH technique, and using the most appropriate controlling mechanisms to enable reproducible and trustworthy data to be obtained.

摘要

随着 RNA 原位杂交(ISH)技术逐渐进入主流实验室,并越来越多地被临床采用,以及更多的多重技术被开发以实现进一步的 RNA ISH 鉴定,因此需要制定一套关于 ISH 验证的指南。这些指南包括方法选择、适当的对照以及方案优化,以及一个核心信息,即了解靶标、了解 ISH 技术,并使用最合适的控制机制,以获得可重复和可靠的数据。

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Guidelines for the Optimization and Validation of In Situ Hybridization.原位杂交优化与验证指南
Methods Mol Biol. 2020;2148:3-17. doi: 10.1007/978-1-0716-0623-0_1.
2
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General introduction to in situ hybridization protocol using nonradioactively labeled probes to detect mRNAs on tissue sections.使用非放射性标记探针检测组织切片上mRNA的原位杂交实验方案概述。
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Slot-blot hybridization in studying gene expression during oxygen deprivation.狭缝杂交技术在研究缺氧过程中的基因表达情况。
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Digoxigenin as an alternative probe labeling for in situ hybridization.洋地黄毒苷作为原位杂交的一种替代探针标记物。
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Use of in situ hybridization to examine gene expression in the embryonic, neonatal, and adult urogenital system.使用原位杂交技术检测胚胎、新生儿及成年泌尿生殖系统中的基因表达。
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本文引用的文献

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Multiplexed detection of RNA using MERFISH and branched DNA amplification.MERFISH 和分支 DNA 扩增的 RNA 多重检测。
Sci Rep. 2019 May 22;9(1):7721. doi: 10.1038/s41598-019-43943-8.
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SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues.SABER 增强 FISH:在细胞和组织中增强 RNA 和 DNA 的多重成像。
Nat Methods. 2019 Jun;16(6):533-544. doi: 10.1038/s41592-019-0404-0. Epub 2019 May 20.
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Setting out the frame conditions for feasible use of FFPE derived RNA.为福尔马林固定石蜡包埋(FFPE)来源的RNA的可行应用设定框架条件。
Pathol Res Pract. 2019 Feb;215(2):381-386. doi: 10.1016/j.prp.2018.12.027. Epub 2018 Dec 28.
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RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples.RollFISH可对石蜡包埋肿瘤组织样本中的单分子RNA生物标志物进行可靠定量。
Commun Biol. 2018 Nov 28;1:209. doi: 10.1038/s42003-018-0218-0. eCollection 2018.
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Critical Appraisal of Programmed Death Ligand 1 Reflex Diagnostic Testing: Current Standards and Future Opportunities.程序性死亡配体 1 反射诊断测试的批判性评价:当前标准和未来机遇。
J Thorac Oncol. 2019 Jan;14(1):45-53. doi: 10.1016/j.jtho.2018.09.025. Epub 2018 Oct 6.
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Whole Mount Localization of miRNAs and mRNAs During Somatic Embryogenesis in Arabidopsis.拟南芥体细胞胚胎发生过程中miRNA和mRNA的整体定位
Front Plant Sci. 2018 Sep 4;9:1277. doi: 10.3389/fpls.2018.01277. eCollection 2018.
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Impact of storage conditions on the quality of nucleic acids in paraffin embedded tissues.石蜡包埋组织中核酸质量的存储条件影响。
PLoS One. 2018 Sep 7;13(9):e0203608. doi: 10.1371/journal.pone.0203608. eCollection 2018.
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Detection of AR-V7 transcript with RNA in situ hybridization in human salivary duct cancer.在人涎腺导管癌中采用RNA原位杂交检测AR-V7转录本
Oral Oncol. 2018 Sep;84:134-136. doi: 10.1016/j.oraloncology.2018.06.026. Epub 2018 Jun 28.
9
Whole-Mount and Section In Situ Hybridization in Mouse Embryos for Detecting mRNA Expression and Localization.用于检测mRNA表达和定位的小鼠胚胎全胚胎和切片原位杂交
Methods Mol Biol. 2018;1752:123-131. doi: 10.1007/978-1-4939-7714-7_12.
10
RNAscope hybridization confirms mRNA integrity in formalin-fixed, paraffin-embedded cancer tissue samples.RNAscope杂交技术证实了福尔马林固定、石蜡包埋的癌症组织样本中mRNA的完整性。
Oncotarget. 2017 Oct 16;8(55):93392-93403. doi: 10.18632/oncotarget.21851. eCollection 2017 Nov 7.