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全基因组环状 RNA 分析及 hsa_circ_0006719 作为先天性脊柱侧凸患者潜在新型诊断生物标志物的验证。

Genome-Wide Analysis of circular RNAs and validation of hsa_circ_0006719 as a potential novel diagnostic biomarker in congenital scoliosis patients.

机构信息

Department of Orthopedic Surgery, Peking Union Medical College Hospital, Peking Union Medical College and Chinese Academy of Medical Sciences, Beijing, China.

Beijing Key Laboratory for Genetic Research of Skeletal Deformity, Beijing, China.

出版信息

J Cell Mol Med. 2020 Jun;24(12):7015-7022. doi: 10.1111/jcmm.15370. Epub 2020 May 12.

DOI:10.1111/jcmm.15370
PMID:32394619
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7299707/
Abstract

Congenital scoliosis (CS) is a form of spinal curvature resulting from anomalous development of vertebrae. Recent studies demonstrated that circRNAs could serve as potential biomarkers of disease diagnosis. Genome-wide circRNAs expression in seven CS patients and three healthy controls was initially detected. Bioinformatics analysis was conducted to explore the potential pathological pathway of CS. Quantitative PCR (qPCR) was performed to validate the selected circRNAs in the replication cohort with 32 CS patients and 30 healthy controls. Logistic regression controlling for gender was conducted to compare the expression difference. Receiver operating characteristic (ROC) curve analysis was performed to evaluate the diagnostic value. Twenty-two differentially expressed circRNAs were filtered from genome-wide circRNA sequencing. Seven circRNAs were validated by qPCR. Only hsa_circ_0006719 was confirmed to have a higher expression level in the CS group than the healthy control group (P = 0.036). Receiver operating characteristic curve also suggested that hsa_circ_0006719 had significant diagnostic value for CS (AUC = 0.739, P = 0.001). We described the first study of circRNAs in CS and validated hsa_circ_0006719 as a potential novel diagnostic biomarker of CS.

摘要

先天性脊柱侧凸 (CS) 是一种脊柱弯曲的形式,源于椎体的异常发育。最近的研究表明,circRNAs 可以作为疾病诊断的潜在生物标志物。本研究最初检测了 7 名 CS 患者和 3 名健康对照者的全基因组 circRNAs 表达情况。通过生物信息学分析探讨 CS 的潜在病理途径。在包含 32 名 CS 患者和 30 名健康对照者的复制队列中,采用 qPCR 对选定的 circRNAs 进行验证。采用逻辑回归校正性别,比较表达差异。绘制受试者工作特征 (ROC) 曲线分析评估诊断价值。从全基因组 circRNA 测序中筛选出 22 个差异表达的 circRNAs,通过 qPCR 验证了其中的 7 个。只有 hsa_circ_0006719 在 CS 组中的表达水平高于健康对照组 (P = 0.036)。ROC 曲线还表明,hsa_circ_0006719 对 CS 具有显著的诊断价值 (AUC = 0.739,P = 0.001)。本研究首次描述了 CS 中的 circRNAs,并验证了 hsa_circ_0006719 作为 CS 潜在的新型诊断生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df8b/7299707/cd632044539b/JCMM-24-7015-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df8b/7299707/0086f7314179/JCMM-24-7015-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df8b/7299707/795063d751ad/JCMM-24-7015-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df8b/7299707/dc016bc678ba/JCMM-24-7015-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df8b/7299707/cd632044539b/JCMM-24-7015-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df8b/7299707/0086f7314179/JCMM-24-7015-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df8b/7299707/795063d751ad/JCMM-24-7015-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df8b/7299707/dc016bc678ba/JCMM-24-7015-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df8b/7299707/cd632044539b/JCMM-24-7015-g004.jpg

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Differential miRNAs profile and bioinformatics analyses in bone marrow mesenchymal stem cells from adolescent idiopathic scoliosis patients.青少年特发性脊柱侧凸患者骨髓间充质干细胞的差异 miRNA 谱和生物信息学分析。
Spine J. 2019 Sep;19(9):1584-1596. doi: 10.1016/j.spinee.2019.05.003. Epub 2019 May 14.
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Identification of Competing Endogenous RNA Regulatory Networks in Vitamin A Deficiency-Induced Congenital Scoliosis by Transcriptome Sequencing Analysis.
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Cell Physiol Biochem. 2018;48(5):2134-2146. doi: 10.1159/000492556. Epub 2018 Aug 15.
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A 360° view of circular RNAs: From biogenesis to functions.环状 RNA 的全景:从生物发生到功能。
Wiley Interdiscip Rev RNA. 2018 Jul;9(4):e1478. doi: 10.1002/wrna.1478. Epub 2018 Apr 14.
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Abnormalities associated with congenital scoliosis in high-altitude geographic regions.高海拔地理区域与先天性脊柱侧凸相关的异常情况。
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