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RTEL1 抑制人类基因组中难以复制的位点与 G-四链体相关的 R 环。

RTEL1 suppresses G-quadruplex-associated R-loops at difficult-to-replicate loci in the human genome.

机构信息

Center for Chromosome Stability, University of Copenhagen, Copenhagen, Denmark.

Institute of Cancer Research, London, UK.

出版信息

Nat Struct Mol Biol. 2020 May;27(5):424-437. doi: 10.1038/s41594-020-0408-6. Epub 2020 May 11.

DOI:10.1038/s41594-020-0408-6
PMID:32398827
Abstract

Oncogene activation during tumorigenesis generates DNA replication stress, a known driver of genome rearrangements. In response to replication stress, certain loci, such as common fragile sites and telomeres, remain under-replicated during interphase and subsequently complete locus duplication in mitosis in a process known as 'MiDAS'. Here, we demonstrate that RTEL1 (regulator of telomere elongation helicase 1) has a genome-wide role in MiDAS at loci prone to form G-quadruplex-associated R-loops, in a process that is dependent on its helicase function. We reveal that SLX4 is required for the timely recruitment of RTEL1 to the affected loci, which in turn facilitates recruitment of other proteins required for MiDAS, including RAD52 and POLD3. Our findings demonstrate that RTEL1 is required for MiDAS and suggest that RTEL1 maintains genome stability by resolving conflicts that can arise between the replication and transcription machineries.

摘要

癌基因在肿瘤发生过程中的激活会产生 DNA 复制应激,这是基因组重排的已知驱动因素。为了应对复制应激,某些基因座,如常见的脆性位点和端粒,在有丝分裂期间仍然复制不足,并在有丝分裂中通过称为“MiDAS”的过程完成基因座的重复。在这里,我们证明 RTEL1(端粒延伸解旋酶 1 的调节剂)在易形成 G-四联体相关 R-环的基因座的 MiDAS 中具有全基因组作用,该过程依赖于其解旋酶功能。我们揭示了 SLX4 对于 RTEL1 及时募集到受影响的基因座是必需的,这反过来又促进了其他 MiDAS 所需蛋白的募集,包括 RAD52 和 POLD3。我们的研究结果表明,RTEL1 是 MiDAS 所必需的,并表明 RTEL1 通过解决复制和转录机制之间可能出现的冲突来维持基因组稳定性。

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RTEL1 suppresses G-quadruplex-associated R-loops at difficult-to-replicate loci in the human genome.RTEL1 抑制人类基因组中难以复制的位点与 G-四链体相关的 R 环。
Nat Struct Mol Biol. 2020 May;27(5):424-437. doi: 10.1038/s41594-020-0408-6. Epub 2020 May 11.
2
RTEL1 dismantles T loops and counteracts telomeric G4-DNA to maintain telomere integrity.RTEL1 拆开 T 环并拮抗端粒 G4-DNA 以维持端粒完整性。
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SLX4 interacts with RTEL1 to prevent transcription-mediated DNA replication perturbations.SLX4 与 RTEL1 相互作用,以防止转录介导的 DNA 复制扰动。
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Rapid dynamics allow the low-abundance RTEL1 helicase to promote telomere replication.快速动力学特性使低丰度的RTEL1解旋酶能够促进端粒复制。

本文引用的文献

1
HumCFS: a database of fragile sites in human chromosomes.HumCFS:人类染色体脆弱位点数据库。
BMC Genomics. 2019 Apr 18;19(Suppl 9):985. doi: 10.1186/s12864-018-5330-5.
2
Folate deficiency drives mitotic missegregation of the human locus.叶酸缺乏导致人类 基因座的有丝分裂错误分离。
Proc Natl Acad Sci U S A. 2018 Dec 18;115(51):13003-13008. doi: 10.1073/pnas.1808377115. Epub 2018 Dec 3.
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DNA Replication Determines Timing of Mitosis by Restricting CDK1 and PLK1 Activation.DNA 复制通过限制 CDK1 和 PLK1 的激活来决定有丝分裂的时间。
Nucleic Acids Res. 2025 Feb 27;53(5). doi: 10.1093/nar/gkaf177.
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Polyubiquitinated PCNA triggers SLX4-mediated break-induced replication in alternative lengthening of telomeres (ALT) cancer cells.多聚泛素化 PCNA 触发 SLX4 介导的断裂诱导复制,在端粒延长(ALT)癌症细胞中。
Nucleic Acids Res. 2024 Oct 28;52(19):11785-11805. doi: 10.1093/nar/gkae785.
5
A comprehensive in silico investigation into the pathogenic SNPs in the RTEL1 gene and their biological consequences.全面的 RTEL1 基因致病变异 SNP 的计算机分析及其生物学后果。
PLoS One. 2024 Sep 6;19(9):e0309713. doi: 10.1371/journal.pone.0309713. eCollection 2024.
6
Structural and biochemical characterization of the C-terminal region of the human RTEL1 helicase.人 RTEL1 解旋酶 C 端结构域的结构和生化特性。
Protein Sci. 2024 Sep;33(9):e5093. doi: 10.1002/pro.5093.
7
Discovery of a Novel Shared Variant Among Gene and lncRNA at Chromosome 20q13.33 in Familial Progressive Myoclonus Epilepsy.在家族性进行性肌阵挛癫痫患者20号染色体q13.33区域发现一个新的基因与长链非编码RNA共享变异体。
Int J Genomics. 2024 Aug 10;2024:7518528. doi: 10.1155/2024/7518528. eCollection 2024.
8
Senataxin RNA/DNA helicase promotes replication restart at co-transcriptional R-loops to prevent MUS81-dependent fork degradation.Senataxin RNA/DNA 解旋酶通过促进共转录 R 环处的复制重启动来防止 MUS81 依赖性叉降解。
Nucleic Acids Res. 2024 Sep 23;52(17):10355-10369. doi: 10.1093/nar/gkae673.
9
Looping forward: exploring R-loop processing and therapeutic potential.向前循环:探索R环加工及治疗潜力。
FEBS Lett. 2025 Jan;599(2):244-266. doi: 10.1002/1873-3468.14947. Epub 2024 Jun 6.
10
Genome-wide identification of replication fork stalling/pausing sites and the interplay between RNA Pol II transcription and DNA replication progression.全基因组鉴定复制叉停滞/暂停位点以及 RNA Pol II 转录和 DNA 复制进程之间的相互作用。
Genome Biol. 2024 May 21;25(1):126. doi: 10.1186/s13059-024-03278-8.
Mol Cell. 2018 Jul 5;71(1):117-128.e3. doi: 10.1016/j.molcel.2018.05.026. Epub 2018 Jun 28.
4
Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers.朝着预测性 R 环计算生物学迈进:对 R 环的全基因组预测揭示了它们与复杂启动子结构、G-四联体和转录活跃增强子的关联。
Nucleic Acids Res. 2018 Sep 6;46(15):7566-7585. doi: 10.1093/nar/gky554.
5
Human cancer cells utilize mitotic DNA synthesis to resist replication stress at telomeres regardless of their telomere maintenance mechanism.人类癌细胞利用有丝分裂DNA合成来抵抗端粒处的复制应激,无论其端粒维持机制如何。
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6
RNase H eliminates R-loops that disrupt DNA replication but is nonessential for efficient DSB repair.核糖核酸酶 H 可消除破坏 DNA 复制的 R 环,但对于有效修复双链断裂是非必需的。
EMBO Rep. 2018 May;19(5). doi: 10.15252/embr.201745335. Epub 2018 Apr 5.
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Inducing and Detecting Mitotic DNA Synthesis at Difficult-to-Replicate Loci.在难以复制的位点诱导和检测有丝分裂DNA合成
Methods Enzymol. 2018;601:45-58. doi: 10.1016/bs.mie.2017.11.025. Epub 2018 Feb 3.
8
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Nat Protoc. 2018 Mar;13(3):551-564. doi: 10.1038/nprot.2017.150. Epub 2018 Feb 22.
9
Intragenic origins due to short G1 phases underlie oncogene-induced DNA replication stress.基因内起源是由于 G1 期较短导致癌基因诱导的 DNA 复制应激。
Nature. 2018 Mar 1;555(7694):112-116. doi: 10.1038/nature25507. Epub 2018 Feb 21.
10
Senataxin resolves RNA:DNA hybrids forming at DNA double-strand breaks to prevent translocations.Senataxin 可解决 DNA 双链断裂处形成的 RNA:DNA 杂交体,以防止易位。
Nat Commun. 2018 Feb 7;9(1):533. doi: 10.1038/s41467-018-02894-w.