Departamento de Ciencia y Tecnología, CONICET, Universidad Nacional de Quilmes, Roque Saenz Peña 182, Bernal, B1876BXD, Buenos Aires, Argentina.
Department of Biomedical Sciences, University of Padova, Viale G. Colombo 3, Padova, I-35131, Padova, Italy.
Database (Oxford). 2020 Jan 1;2020. doi: 10.1093/database/baaa031.
Revenant is a database of resurrected proteins coming from extinct organisms. Currently, it contains a manually curated collection of 84 resurrected proteins derived from bibliographic data. Each protein is extensively annotated, including structural, biochemical and biophysical information. Revenant contains a browse capability designed as a timeline from where the different proteins can be accessed. The oldest Revenant entries are between 4200 and 3500 million years ago, while the younger entries are between 8.8 and 6.3 million years ago. These proteins have been resurrected using computational tools called ancestral sequence reconstruction techniques combined with wet-laboratory synthesis and expression. Resurrected proteins are commonly used, with a noticeable increase during the past years, to explore and test different evolutionary hypotheses such as protein stability, to explore the origin of new functions, to get biochemical insights into past metabolisms and to explore specificity and promiscuous behaviour of ancient proteins.
返生蛋白数据库(Revenant)是一个包含复活蛋白的数据库,这些复活蛋白来自已灭绝的生物体。目前,它包含了 84 种从文献数据中人工精选的复活蛋白,这些蛋白都经过了详细的注释,包括结构、生化和生物物理信息。返生蛋白数据库有一个浏览功能,设计为一个时间轴,可从该时间轴访问不同的蛋白。最古老的返生蛋白条目可以追溯到 4.2 到 3.5 亿年前,而较年轻的条目则在 880 万到 630 万年前。这些蛋白是使用称为祖先序列重建技术的计算工具复活的,结合了湿实验室合成和表达。复活蛋白通常被使用,近年来的使用量明显增加,用于探索和测试不同的进化假说,如蛋白质稳定性,探索新功能的起源,深入了解过去的新陈代谢,并探索古代蛋白的特异性和混杂行为。