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蛋白质互作数据库:ProtMiscuity

ProtMiscuity: a database of promiscuous proteins.

机构信息

Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes - CONICET, Roque Sáenz Peña 352, Bernal B1876BXD Buenos Aires, Argentina.

出版信息

Database (Oxford). 2019 Jan 1;2019. doi: 10.1093/database/baz103.

Abstract

Promiscuous behaviour in proteins and enzymes remains a challenging feature to understand the structure-function relationship. Here we present ProtMiscuity, a manually curated online database of proteins showing catalytic promiscuity. ProtMiscuity contains information about canonical and promiscuous activities comprising 88 different reactions in 57 proteins from 40 different organisms. It can be searched or browsed by protein names, organisms and descriptions of canonical and promiscuous reactions. Entries provide information on reaction substrates, products and kinetic parameters, mapping of active sites to sequence and structure and links to external resources with biological and functional annotations. ProtMiscuity could assist in studying the underlying mechanisms of promiscuous reactions by offering a unique and curated collection of experimentally derived data that is otherwise hard to find, retrieve and validate from literature.

摘要

蛋白质和酶的混杂行为仍然是理解结构-功能关系的一个具有挑战性的特征。在这里,我们展示了 ProtMiscuity,这是一个手动整理的在线数据库,其中包含表现出催化混杂性的蛋白质。ProtMiscuity 包含有关规范和混杂活性的信息,其中包括来自 40 个不同生物体的 57 种蛋白质中的 88 种不同反应。它可以通过蛋白质名称、生物体和规范及混杂反应的描述进行搜索或浏览。条目提供了有关反应底物、产物和动力学参数的信息,将活性位点映射到序列和结构,并提供了与具有生物学和功能注释的外部资源的链接。ProtMiscuity 可以通过提供独特且经过精心整理的实验数据来帮助研究混杂反应的潜在机制,这些数据在其他情况下很难从文献中找到、检索和验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad40/6813136/c4b89d39261d/baz103f1.jpg

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