Laboratório de Biotecnologia de Enzimas e Biotransformações, Universidade Federal do Pará, Belém, PA 66075-900, Brazil.
Departamento de Ciências Naturais, Centro de Ciências Sociais e Educação, Universidade do Estado do Pará, Belém, PA 66050-540, Brazil.
Int J Mol Sci. 2020 May 12;21(10):3426. doi: 10.3390/ijms21103426.
Essential oils have shown promise as antiviral agents against several pathogenic viruses. In this work we hypothesized that essential oil components may interact with key protein targets of the 2019 severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). A molecular docking analysis was carried out using 171 essential oil components with SARS-CoV-2 main protease (SARS-CoV-2 M), SARS-CoV-2 endoribonucleoase (SARS-CoV-2 Nsp15/NendoU), SARS-CoV-2 ADP-ribose-1″-phosphatase (SARS-CoV-2 ADRP), SARS-CoV-2 RNA-dependent RNA polymerase (SARS-CoV-2 RdRp), the binding domain of the SARS-CoV-2 spike protein (SARS-CoV-2 rS), and human angiotensin-converting enzyme (hACE2). The compound with the best normalized docking score to SARS-CoV-2 M was the sesquiterpene hydrocarbon ()-β-farnesene. The best docking ligands for SARS-CoV Nsp15/NendoU were (,)-α-farnesene, ()-β-farnesene, and (,)-farnesol. (,)-Farnesol showed the most exothermic docking to SARS-CoV-2 ADRP. Unfortunately, the docking energies of (,)-α-farnesene, ()-β-farnesene, and (,)-farnesol with SARS-CoV-2 targets were relatively weak compared to docking energies with other proteins and are, therefore, unlikely to interact with the virus targets. However, essential oil components may act synergistically, essential oils may potentiate other antiviral agents, or they may provide some relief of COVID-19 symptoms.
精油在对抗几种致病病毒方面显示出了作为抗病毒药物的潜力。在这项工作中,我们假设精油成分可能与 2019 年严重急性呼吸综合征冠状病毒 2(SARS-CoV-2)的关键蛋白靶标相互作用。使用 171 种精油成分对 SARS-CoV-2 主要蛋白酶(SARS-CoV-2 M)、SARS-CoV-2 内切核糖核酸酶(SARS-CoV-2 Nsp15/NendoU)、SARS-CoV-2 ADP-核糖-1''-磷酸酶(SARS-CoV-2 ADRP)、SARS-CoV-2 RNA 依赖性 RNA 聚合酶(SARS-CoV-2 RdRp)、SARS-CoV-2 刺突蛋白的结合域(SARS-CoV-2 rS)和人血管紧张素转化酶(hACE2)进行了分子对接分析。与 SARS-CoV-2 M 具有最佳归一化对接分数的化合物是倍半萜烃()-β-法呢烯。与 SARS-CoV Nsp15/NendoU 具有最佳对接配体的化合物是(,)-α-法呢烯、()-β-法呢烯和(,)-法呢醇。(,)-法呢醇与 SARS-CoV-2 ADRP 的对接最放热。不幸的是,与其他蛋白质的对接能相比,(,)-α-法呢烯、()-β-法呢烯和(,)-法呢醇与 SARS-CoV-2 靶标的对接能相对较弱,因此不太可能与病毒靶标相互作用。然而,精油成分可能具有协同作用,精油可能增强其他抗病毒药物的作用,或者它们可能为缓解 COVID-19 症状提供一些帮助。