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从女性膀胱中分离出的詹氏乳杆菌菌株UMB7766的基因组序列草图

Draft Genome Sequence of Lactobacillus jensenii Strain UMB7766, Isolated from the Female Bladder.

作者信息

Miller-Ensminger Taylor, Wolfe Alan J, Putonti Catherine

机构信息

Bioinformatics Program, Loyola University Chicago, Chicago, Illinois, USA.

Department of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicago, Maywood, Illinois, USA.

出版信息

Microbiol Resour Announc. 2020 May 14;9(20):e00392-20. doi: 10.1128/MRA.00392-20.

DOI:10.1128/MRA.00392-20
PMID:32409549
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7225548/
Abstract

is a beneficial and prominent community member within both the vaginal and female urinary microbiota. As more genomes for strains are made publicly available, we gain more knowledge about this beneficial community member. Here, we present the draft genome sequence of UMB7766, which was isolated from a urine specimen from a catheterized female patient with recurrent urinary tract infections.

摘要

在阴道和女性泌尿微生物群中,它是一个有益且突出的群落成员。随着更多菌株的基因组公开可用,我们对这个有益的群落成员有了更多了解。在此,我们展示了UMB7766的基因组草图序列,该菌株是从一名患有复发性尿路感染的导尿女性患者的尿液标本中分离出来的。

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本文引用的文献

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Microbiol Resour Announc. 2019 Aug 29;8(35):e00970-19. doi: 10.1128/MRA.00970-19.
2
Culturing of female bladder bacteria reveals an interconnected urogenital microbiota.女性膀胱细菌培养揭示了相互关联的泌尿生殖微生物组。
Nat Commun. 2018 Apr 19;9(1):1557. doi: 10.1038/s41467-018-03968-5.
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Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.全细菌生物信息学数据库与分析资源中心PATRIC的改进。
Nucleic Acids Res. 2017 Jan 4;45(D1):D535-D542. doi: 10.1093/nar/gkw1017. Epub 2016 Nov 29.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
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Mash: fast genome and metagenome distance estimation using MinHash.Mash:使用MinHash进行快速的基因组和宏基因组距离估计。
Genome Biol. 2016 Jun 20;17(1):132. doi: 10.1186/s13059-016-0997-x.
6
Urinary tract infections: epidemiology, mechanisms of infection and treatment options.尿路感染:流行病学、感染机制及治疗选择
Nat Rev Microbiol. 2015 May;13(5):269-84. doi: 10.1038/nrmicro3432. Epub 2015 Apr 8.
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Comparative functional genomics of Lactobacillus spp. reveals possible mechanisms for specialization of vaginal lactobacilli to their environment.乳酸菌属的比较功能基因组学揭示了阴道乳杆菌适应其环境的可能机制。
J Bacteriol. 2014 Apr;196(7):1458-70. doi: 10.1128/JB.01439-13. Epub 2014 Jan 31.
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Infect Dis Clin North Am. 2014 Mar;28(1):1-13. doi: 10.1016/j.idc.2013.09.003. Epub 2013 Dec 8.
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Urine is not sterile: use of enhanced urine culture techniques to detect resident bacterial flora in the adult female bladder.尿液并非无菌:采用强化尿液培养技术检测成年女性膀胱中的常驻细菌菌群。
J Clin Microbiol. 2014 Mar;52(3):871-6. doi: 10.1128/JCM.02876-13. Epub 2013 Dec 26.
10
Lactobacillus proteins are associated with the bactericidal activity against E. coli of female genital tract secretions.乳酸杆菌蛋白与女性生殖道分泌物对大肠杆菌的杀菌活性有关。
PLoS One. 2012;7(11):e49506. doi: 10.1371/journal.pone.0049506. Epub 2012 Nov 19.