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从女性尿道分离出的耐抗生素粪肠球菌菌株UMB0843的基因组序列草图

Draft Genome Sequence of Antibiotic-Resistant Enterococcus faecalis Strain UMB0843, Isolated from the Female Urinary Tract.

作者信息

Purta Natalia, Miller-Ensminger Taylor, Voukadinova Adelina, Wolfe Alan J, Putonti Catherine

机构信息

Neuroscience Program, Loyola University Chicago, Chicago, Illinois, USA.

Bioinformatics Program, Loyola University Chicago, Chicago, Illinois, USA.

出版信息

Microbiol Resour Announc. 2020 May 14;9(20):e00407-20. doi: 10.1128/MRA.00407-20.

DOI:10.1128/MRA.00407-20
PMID:32409554
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7225553/
Abstract

Here, we introduce the 2.8-Mbp draft genome of strain UMB0843, isolated from the female urinary tract. is a leading cause of nosocomial infections, and many strains are often resistant to multiple antibiotics. We focus our genome analysis on the multiple genes involved in antibiotic resistance in this strain.

摘要

在此，我们介绍从女性尿道分离出的UMB0843菌株的280万碱基对基因组草图。该菌株是医院感染的主要病因，许多菌株往往对多种抗生素具有抗性。我们将基因组分析重点放在该菌株中与抗生素抗性相关的多个基因上。

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本文引用的文献

1
Comparative study of antimicrobial resistance and biofilm formation among Gram-positive uropathogens isolated from community-acquired urinary tract infections and catheter-associated urinary tract infections.从社区获得性尿路感染和导管相关性尿路感染中分离出的革兰氏阳性尿路病原体的耐药性和生物膜形成的比较研究。
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Microorganisms Identified in the Maternal Bladder: Discovery of the Maternal Bladder Microbiota.在母体膀胱中鉴定出的微生物：母体膀胱微生物群的发现。
AJP Rep. 2017 Jul;7(3):e188-e196. doi: 10.1055/s-0037-1606860. Epub 2017 Sep 29.
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Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.全细菌生物信息学数据库与分析资源中心PATRIC的改进。
Nucleic Acids Res. 2017 Jan 4;45(D1):D535-D542. doi: 10.1093/nar/gkw1017. Epub 2016 Nov 29.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
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Urine is not sterile: use of enhanced urine culture techniques to detect resident bacterial flora in the adult female bladder.尿液并非无菌：采用强化尿液培养技术检测成年女性膀胱中的常驻细菌菌群。
J Clin Microbiol. 2014 Mar;52(3):871-6. doi: 10.1128/JCM.02876-13. Epub 2013 Dec 26.
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Genomic transition of enterococci from gut commensals to leading causes of multidrug-resistant hospital infection in the antibiotic era.肠球菌在抗生素时代从肠道共生菌向主要耐药性医院感染病原体的基因组转变。
Curr Opin Microbiol. 2013 Feb;16(1):10-6. doi: 10.1016/j.mib.2013.01.006. Epub 2013 Feb 5.
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Intestinal colonization resistance.肠道定植抗力。
Immunology. 2013 Jan;138(1):1-11. doi: 10.1111/j.1365-2567.2012.03616.x.
8
Identification of acquired antimicrobial resistance genes.获得性抗菌耐药基因的鉴定。
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
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10
NHSN annual update: antimicrobial-resistant pathogens associated with healthcare-associated infections: annual summary of data reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2006-2007.国家医疗安全网络年度更新：与医疗保健相关感染有关的抗菌药物耐药病原体：2006 - 2007年向疾病控制和预防中心国家医疗安全网络报告的数据年度总结
Infect Control Hosp Epidemiol. 2008 Nov;29(11):996-1011. doi: 10.1086/591861.