Chakraborty Chiranjib, Sharma Ashish Ranjan, Sharma Garima, Bhattacharya Manojit, Lee Sang-Soo
Adamas University, North, 24 Parganas, Kolkata, 700126 West Bengal India.
Institute for Skeletal Aging & Orthopedic Surgery, Chuncheon Sacred Heart Hospital, Hallym University, Chuncheon, 24252 Republic of Korea.
Int J Pept Res Ther. 2020;26(4):2505-2517. doi: 10.1007/s10989-020-10043-5. Epub 2020 Feb 8.
The diverse, evolutionary architectures of proteins can be regarded as molecular fossils, tracing a historical path that marks important milestones across life. The B1-subfamily of GPCRs (G-protein-coupled receptors) are medically significant proteins that comprise 15 transmembrane receptor proteins in . These proteins control the intracellular concentration of cyclic AMP as well as various vital processes in the body. However, little is known about the evolutionary correlation and conservational blueprint of this GPCR subfamily. We performed a comprehensive analysis to understand the evolutionary architecture among 13 members of the B1-subfamily. Multiple sequence alignment analysis exhibited six multiple sequence aligned blocks and five highly aligned blocks. Molecular phylogenetics indicated that CRHR1 and CRHR2 share a typical ancestral relationship and are siblings in 100% bootstrap replications with a total of 24 nodes observed in the cladogram. CRHR2 has the maximum number of extremely conserved amino acids followed by ADCYAP1R1. The longest continuous number sequence logos (74) were found between sequence location 349 and 423, and consequently, the maximum and minimum logo height recorded was 3.6 bits and 0.18 bits, respectively. Finally, to understand the model and pattern of evolutionary relatedness, the conservation blueprint, and the diversification among the members of a protein family, GPCR distribution from several species throughout the animal kingdom was analysed. Together, the study provides an evolutionary insight and offers a rapid method to explore the potential of depicting the evolutionary relationship, conservation blueprint, and diversification among the B1-subfamily of GPCRs using bioinformatics, algorithm analysis, and mathematical models.
蛋白质多样的进化结构可被视为分子化石,追溯着一条跨越生命历程中重要里程碑的历史路径。G蛋白偶联受体(GPCR)的B1亚家族是具有医学意义的蛋白质,其中包含15种跨膜受体蛋白。这些蛋白质控制着细胞内环磷酸腺苷的浓度以及身体的各种重要过程。然而,对于这个GPCR亚家族的进化相关性和保守蓝图却知之甚少。我们进行了全面分析,以了解B1亚家族13个成员之间的进化结构。多序列比对分析显示有六个多序列比对块和五个高度比对块。分子系统发育分析表明,促肾上腺皮质激素释放激素受体1(CRHR1)和促肾上腺皮质激素释放激素受体2(CRHR2)具有典型的祖先关系,在系统发育树中,在100%的自展重复中它们是姊妹关系,共观察到24个节点。CRHR2具有最多数量的极度保守氨基酸,其次是促肾上腺皮质激素释放因子受体1(ADCYAP1R1)。在序列位置349和423之间发现了最长的连续数字序列图谱(74),因此,记录的最大和最小图谱高度分别为3.6比特和0.18比特。最后,为了解进化相关性的模型和模式、保守蓝图以及蛋白质家族成员之间的多样性,分析了整个动物界多个物种的GPCR分布。总之,该研究提供了进化方面的见解,并提供了一种快速方法,可利用生物信息学、算法分析和数学模型来探索描绘GPCR B1亚家族之间的进化关系、保守蓝图和多样性的潜力。